miRNA display CGI


Results 1 - 20 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1814 3' -59.9 NC_001347.2 + 122652 0.77 0.310214
Target:  5'- gGCGCCACguucccacgGGACgCGCUCCUGgGGCg -3'
miRNA:   3'- -CGCGGUGag-------CCUG-GCGAGGACgCUGg -5'
1814 3' -59.9 NC_001347.2 + 117760 0.76 0.3238
Target:  5'- cCGCCGCUgcccccgugaCGGuGCUGCUUCUGCGACUg -3'
miRNA:   3'- cGCGGUGA----------GCC-UGGCGAGGACGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 216248 0.75 0.381722
Target:  5'- -aGUgGCUCGGACCGCcggcuguUUCUGCGcACCg -3'
miRNA:   3'- cgCGgUGAGCCUGGCG-------AGGACGC-UGG- -5'
1814 3' -59.9 NC_001347.2 + 57603 0.75 0.398238
Target:  5'- cGCGCCuCUCGGAgCCGCcgacgcuggCgCUGCGGCUg -3'
miRNA:   3'- -CGCGGuGAGCCU-GGCGa--------G-GACGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 125470 0.74 0.406262
Target:  5'- cGCGCCAa--GGACUGCaUCCgcgGCGACa -3'
miRNA:   3'- -CGCGGUgagCCUGGCG-AGGa--CGCUGg -5'
1814 3' -59.9 NC_001347.2 + 199698 0.74 0.430933
Target:  5'- cGCGCC----GGGCgGCuUCCUGCGGCCg -3'
miRNA:   3'- -CGCGGugagCCUGgCG-AGGACGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 65712 0.73 0.473922
Target:  5'- uGCGCCGCcgauugCGGACCGCagggGCGACg -3'
miRNA:   3'- -CGCGGUGa-----GCCUGGCGaggaCGCUGg -5'
1814 3' -59.9 NC_001347.2 + 37192 0.72 0.509807
Target:  5'- cCGUCGCaaGGGCUGCUCg-GCGGCCa -3'
miRNA:   3'- cGCGGUGagCCUGGCGAGgaCGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 72120 0.72 0.509807
Target:  5'- aGCGCCAUcUGGACgcgCGCUCgCUGgUGGCCg -3'
miRNA:   3'- -CGCGGUGaGCCUG---GCGAG-GAC-GCUGG- -5'
1814 3' -59.9 NC_001347.2 + 190958 0.72 0.518957
Target:  5'- cCGCUACUCGGAggggCGC-CCgGCGGCCc -3'
miRNA:   3'- cGCGGUGAGCCUg---GCGaGGaCGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 124724 0.72 0.518957
Target:  5'- cCGCCGCUcuuccaCGGACCGCUggcgcgcgagaaCCUGCuGACg -3'
miRNA:   3'- cGCGGUGA------GCCUGGCGA------------GGACG-CUGg -5'
1814 3' -59.9 NC_001347.2 + 151885 0.72 0.546779
Target:  5'- cGgGCCACgUCGGGCUGCUgCcGCcGCCa -3'
miRNA:   3'- -CgCGGUG-AGCCUGGCGAgGaCGcUGG- -5'
1814 3' -59.9 NC_001347.2 + 68179 0.72 0.546779
Target:  5'- aGCGCUuucCGGGCCGCgucggCCUGCuGAUCu -3'
miRNA:   3'- -CGCGGugaGCCUGGCGa----GGACG-CUGG- -5'
1814 3' -59.9 NC_001347.2 + 36626 0.72 0.55616
Target:  5'- cCGCCGCUCGcGcgccuCCGCUC--GCGGCCg -3'
miRNA:   3'- cGCGGUGAGC-Cu----GGCGAGgaCGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 167176 0.71 0.584561
Target:  5'- -gGCCGC-CGcGGCCGC-CgCUGUGGCCg -3'
miRNA:   3'- cgCGGUGaGC-CUGGCGaG-GACGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 105294 0.71 0.613232
Target:  5'- cGCGUCcCUgGGGCUGCUgCUGCacgggcucGACCg -3'
miRNA:   3'- -CGCGGuGAgCCUGGCGAgGACG--------CUGG- -5'
1814 3' -59.9 NC_001347.2 + 211425 0.7 0.651605
Target:  5'- aGCGCU-CU-GGACUgGUUUCUGCGACCu -3'
miRNA:   3'- -CGCGGuGAgCCUGG-CGAGGACGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 215994 0.7 0.66118
Target:  5'- aUGCCGC-CGGAgcuccCCGCgcugCCUGUGGCg -3'
miRNA:   3'- cGCGGUGaGCCU-----GGCGa---GGACGCUGg -5'
1814 3' -59.9 NC_001347.2 + 229027 0.7 0.66118
Target:  5'- aGCGCgACgCGGGCaCGCUgCUGCcgcucggacGGCCg -3'
miRNA:   3'- -CGCGgUGaGCCUG-GCGAgGACG---------CUGG- -5'
1814 3' -59.9 NC_001347.2 + 158643 0.7 0.670735
Target:  5'- cCGCUACgcaucCGuGGCCGCggCCgGCGGCCu -3'
miRNA:   3'- cGCGGUGa----GC-CUGGCGa-GGaCGCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.