miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1814 3' -59.9 NC_001347.2 + 33255 0.66 0.846162
Target:  5'- cGCGCCGCa-GGAUCGCac--GCGGCUg -3'
miRNA:   3'- -CGCGGUGagCCUGGCGaggaCGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 4053 0.66 0.846162
Target:  5'- cGCGCCugUCGcGAUC-CUCaugGCGAggaCCg -3'
miRNA:   3'- -CGCGGugAGC-CUGGcGAGga-CGCU---GG- -5'
1814 3' -59.9 NC_001347.2 + 55548 0.66 0.841624
Target:  5'- cGCGCCGCUgCGcGAagaacugggcuauguCCGCUUCga-GACCg -3'
miRNA:   3'- -CGCGGUGA-GC-CU---------------GGCGAGGacgCUGG- -5'
1814 3' -59.9 NC_001347.2 + 39079 0.66 0.837796
Target:  5'- aCGCCGCUCGGAgcaCCGCcgcagcccggcuuUCCcgGCGuCg -3'
miRNA:   3'- cGCGGUGAGCCU---GGCG-------------AGGa-CGCuGg -5'
1814 3' -59.9 NC_001347.2 + 217815 0.66 0.837796
Target:  5'- uGCG-CACUcCGGGcgagaugacacguCCGCUacugcUCUGCGGCCa -3'
miRNA:   3'- -CGCgGUGA-GCCU-------------GGCGA-----GGACGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 191876 0.67 0.830803
Target:  5'- cGUGCCGCUC--GCCGCUggcgGCGACg -3'
miRNA:   3'- -CGCGGUGAGccUGGCGAgga-CGCUGg -5'
1814 3' -59.9 NC_001347.2 + 48575 0.67 0.830803
Target:  5'- uGgGCUuccuCUgGGAuaucCCG-UCCUGCGACCg -3'
miRNA:   3'- -CgCGGu---GAgCCU----GGCgAGGACGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 59955 0.67 0.822882
Target:  5'- -gGCUACUgGGGCaaguuuCGCUUUUGCGGCg -3'
miRNA:   3'- cgCGGUGAgCCUG------GCGAGGACGCUGg -5'
1814 3' -59.9 NC_001347.2 + 162917 0.67 0.822882
Target:  5'- cCGCCGCcUCGGAC---UCCUGC-ACCg -3'
miRNA:   3'- cGCGGUG-AGCCUGgcgAGGACGcUGG- -5'
1814 3' -59.9 NC_001347.2 + 56326 0.67 0.814809
Target:  5'- aGUGCgGCUagagcgCGGGCCGCgugCCUGgGAa- -3'
miRNA:   3'- -CGCGgUGA------GCCUGGCGa--GGACgCUgg -5'
1814 3' -59.9 NC_001347.2 + 124328 0.67 0.814809
Target:  5'- aGCGCaGCgUCGGcgaGCCGCgcacgCCcgcGCGGCCg -3'
miRNA:   3'- -CGCGgUG-AGCC---UGGCGa----GGa--CGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 217982 0.67 0.814809
Target:  5'- uGCGCgACaCGGGCUGUUgcaCUGCGagGCCa -3'
miRNA:   3'- -CGCGgUGaGCCUGGCGAg--GACGC--UGG- -5'
1814 3' -59.9 NC_001347.2 + 218505 0.67 0.80659
Target:  5'- aGUGCCGCUCcacGCCGCggcaCCaUGCG-CCa -3'
miRNA:   3'- -CGCGGUGAGcc-UGGCGa---GG-ACGCuGG- -5'
1814 3' -59.9 NC_001347.2 + 192046 0.67 0.80659
Target:  5'- gGCGCCGCUgcUGcuGCCGCgUCCgcccCGACCa -3'
miRNA:   3'- -CGCGGUGA--GCc-UGGCG-AGGac--GCUGG- -5'
1814 3' -59.9 NC_001347.2 + 59788 0.67 0.80659
Target:  5'- uCGUCACUC--GCCGCg-UUGCGACCu -3'
miRNA:   3'- cGCGGUGAGccUGGCGagGACGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 227891 0.67 0.80659
Target:  5'- cCGCCGC-CGaGGCCGCgcg-GCGGCUg -3'
miRNA:   3'- cGCGGUGaGC-CUGGCGaggaCGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 120796 0.67 0.801591
Target:  5'- gGCGCCuccACUuccgCGGGCCGCaaacgcaaaucagcaUCCUcgGCGACg -3'
miRNA:   3'- -CGCGG---UGA----GCCUGGCG---------------AGGA--CGCUGg -5'
1814 3' -59.9 NC_001347.2 + 167273 0.67 0.799074
Target:  5'- cCGCCACUgCGGAagucugucugggcgaCGCUCUgcccgGCGGCg -3'
miRNA:   3'- cGCGGUGA-GCCUg--------------GCGAGGa----CGCUGg -5'
1814 3' -59.9 NC_001347.2 + 204389 0.67 0.798232
Target:  5'- aCGCCGCU-GGAacgcgCGCUUUUgGCGGCCg -3'
miRNA:   3'- cGCGGUGAgCCUg----GCGAGGA-CGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 89954 0.67 0.798232
Target:  5'- uGCGCCGCg-GGGCUGUgcgaggCCUGUGGg- -3'
miRNA:   3'- -CGCGGUGagCCUGGCGa-----GGACGCUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.