miRNA display CGI


Results 1 - 20 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1814 3' -59.9 NC_001347.2 + 4053 0.66 0.846162
Target:  5'- cGCGCCugUCGcGAUC-CUCaugGCGAggaCCg -3'
miRNA:   3'- -CGCGGugAGC-CUGGcGAGga-CGCU---GG- -5'
1814 3' -59.9 NC_001347.2 + 22220 0.69 0.698263
Target:  5'- gGCGCCGCugccgcgUCGGguACCGCUgCCgcagauggGCGcACCg -3'
miRNA:   3'- -CGCGGUG-------AGCC--UGGCGA-GGa-------CGC-UGG- -5'
1814 3' -59.9 NC_001347.2 + 29611 0.66 0.853588
Target:  5'- aGCGCUACUUucGcCCGCUgUUGCGcGCCu -3'
miRNA:   3'- -CGCGGUGAGc-CuGGCGAgGACGC-UGG- -5'
1814 3' -59.9 NC_001347.2 + 30748 0.67 0.798232
Target:  5'- gGCGCCACg-GGACUGguaCUUCUGCuACUg -3'
miRNA:   3'- -CGCGGUGagCCUGGC---GAGGACGcUGG- -5'
1814 3' -59.9 NC_001347.2 + 32581 0.69 0.708607
Target:  5'- uGCGUCACggcaACCGCUcgggCCUGCGACg -3'
miRNA:   3'- -CGCGGUGagccUGGCGA----GGACGCUGg -5'
1814 3' -59.9 NC_001347.2 + 32669 0.66 0.874788
Target:  5'- cGCGCCgccgACUCGcuGCCGCagCUgcuggagcGCGGCCu -3'
miRNA:   3'- -CGCGG----UGAGCc-UGGCGagGA--------CGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 33126 0.66 0.874788
Target:  5'- gGgGCC-CUCGGugCGCUaCCg--GGCCc -3'
miRNA:   3'- -CgCGGuGAGCCugGCGA-GGacgCUGG- -5'
1814 3' -59.9 NC_001347.2 + 33255 0.66 0.846162
Target:  5'- cGCGCCGCa-GGAUCGCac--GCGGCUg -3'
miRNA:   3'- -CGCGGUGagCCUGGCGaggaCGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 33289 0.68 0.763551
Target:  5'- aGCGCCuGCUCuGGCa-CUCgCUGCGACa -3'
miRNA:   3'- -CGCGG-UGAGcCUGgcGAG-GACGCUGg -5'
1814 3' -59.9 NC_001347.2 + 34161 0.69 0.699206
Target:  5'- aGCGCgaACUCaucGGCCGCUgCCUgccgGCGGCCc -3'
miRNA:   3'- -CGCGg-UGAGc--CUGGCGA-GGA----CGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 35822 0.69 0.708607
Target:  5'- cGCGCCACggCGGGucguUgGCUCCcgcugUGCuGGCCg -3'
miRNA:   3'- -CGCGGUGa-GCCU----GgCGAGG-----ACG-CUGG- -5'
1814 3' -59.9 NC_001347.2 + 36626 0.72 0.55616
Target:  5'- cCGCCGCUCGcGcgccuCCGCUC--GCGGCCg -3'
miRNA:   3'- cGCGGUGAGC-Cu----GGCGAGgaCGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 37061 0.66 0.874788
Target:  5'- cGCGCgACUUGG-CCGaccugugCgUGCGACg -3'
miRNA:   3'- -CGCGgUGAGCCuGGCga-----GgACGCUGg -5'
1814 3' -59.9 NC_001347.2 + 37192 0.72 0.509807
Target:  5'- cCGUCGCaaGGGCUGCUCg-GCGGCCa -3'
miRNA:   3'- cGCGGUGagCCUGGCGAGgaCGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 39079 0.66 0.837796
Target:  5'- aCGCCGCUCGGAgcaCCGCcgcagcccggcuuUCCcgGCGuCg -3'
miRNA:   3'- cGCGGUGAGCCU---GGCG-------------AGGa-CGCuGg -5'
1814 3' -59.9 NC_001347.2 + 48575 0.67 0.830803
Target:  5'- uGgGCUuccuCUgGGAuaucCCG-UCCUGCGACCg -3'
miRNA:   3'- -CgCGGu---GAgCCU----GGCgAGGACGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 51673 0.67 0.795698
Target:  5'- cGCGCCauccuggaaucugaGCggCGGACCGCgaagggaaaauUCCUaUGACCu -3'
miRNA:   3'- -CGCGG--------------UGa-GCCUGGCG-----------AGGAcGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 55548 0.66 0.841624
Target:  5'- cGCGCCGCUgCGcGAagaacugggcuauguCCGCUUCga-GACCg -3'
miRNA:   3'- -CGCGGUGA-GC-CU---------------GGCGAGGacgCUGG- -5'
1814 3' -59.9 NC_001347.2 + 56050 0.66 0.874788
Target:  5'- gGCGuucggacgaccuCCGCgUCGGucGCCGcCUCC-GCGGCCc -3'
miRNA:   3'- -CGC------------GGUG-AGCC--UGGC-GAGGaCGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 56326 0.67 0.814809
Target:  5'- aGUGCgGCUagagcgCGGGCCGCgugCCUGgGAa- -3'
miRNA:   3'- -CGCGgUGA------GCCUGGCGa--GGACgCUgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.