miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1814 5' -56 NC_001347.2 + 79503 0.66 0.961456
Target:  5'- gGUGC-CG-GGugGCGaGUAcCCUGUGGAc -3'
miRNA:   3'- -CGCGaGUgUCugCGC-CAU-GGACACCU- -5'
1814 5' -56 NC_001347.2 + 56326 0.66 0.957967
Target:  5'- aGUGCggcuagagCGCGGGC-CGcGUGCCUG-GGAa -3'
miRNA:   3'- -CGCGa-------GUGUCUGcGC-CAUGGACaCCU- -5'
1814 5' -56 NC_001347.2 + 61150 0.66 0.954268
Target:  5'- cGCGCU-GCAGugGCuGG-ACCUG-GGc -3'
miRNA:   3'- -CGCGAgUGUCugCG-CCaUGGACaCCu -5'
1814 5' -56 NC_001347.2 + 55324 0.66 0.950355
Target:  5'- cGUGCUCGCuGAacgugcUGCaGGUAUUUGUGGu -3'
miRNA:   3'- -CGCGAGUGuCU------GCG-CCAUGGACACCu -5'
1814 5' -56 NC_001347.2 + 198278 0.66 0.950355
Target:  5'- aGCGCUUACuaucUGCGGUggcacGCCUGUGu- -3'
miRNA:   3'- -CGCGAGUGucu-GCGCCA-----UGGACACcu -5'
1814 5' -56 NC_001347.2 + 215297 0.66 0.950355
Target:  5'- uGCGCUCACcGAgGUGGagaGCCgucguuggugGUGGGc -3'
miRNA:   3'- -CGCGAGUGuCUgCGCCa--UGGa---------CACCU- -5'
1814 5' -56 NC_001347.2 + 103642 0.66 0.9458
Target:  5'- gGCGCUgGCAcgcGCGCGGUugCUcgaguaccggcgcGUGGu -3'
miRNA:   3'- -CGCGAgUGUc--UGCGCCAugGA-------------CACCu -5'
1814 5' -56 NC_001347.2 + 127997 0.67 0.941875
Target:  5'- cGCGCUCA-AGACGCuGUGCCacccgGUGc- -3'
miRNA:   3'- -CGCGAGUgUCUGCGcCAUGGa----CACcu -5'
1814 5' -56 NC_001347.2 + 195610 0.67 0.941875
Target:  5'- -aGaCUCGCGGACuCGGUGCCccggccccuggaUGUGGu -3'
miRNA:   3'- cgC-GAGUGUCUGcGCCAUGG------------ACACCu -5'
1814 5' -56 NC_001347.2 + 138204 0.67 0.936834
Target:  5'- cGCuCUCACAGAaaaaaguCGCGGguuCCucguUGUGGAu -3'
miRNA:   3'- -CGcGAGUGUCU-------GCGCCau-GG----ACACCU- -5'
1814 5' -56 NC_001347.2 + 61357 0.67 0.926974
Target:  5'- gGCGCUCACGG-CGCGuuucuucGUGCCcGaGGGc -3'
miRNA:   3'- -CGCGAGUGUCuGCGC-------CAUGGaCaCCU- -5'
1814 5' -56 NC_001347.2 + 182315 0.68 0.916775
Target:  5'- cGUGCggGgAGGauugacgugUGCGGUGCUUGUGGAa -3'
miRNA:   3'- -CGCGagUgUCU---------GCGCCAUGGACACCU- -5'
1814 5' -56 NC_001347.2 + 193221 0.68 0.911082
Target:  5'- gGUGCUgGCGGcCGUGG--CCUGUGGc -3'
miRNA:   3'- -CGCGAgUGUCuGCGCCauGGACACCu -5'
1814 5' -56 NC_001347.2 + 228372 0.68 0.911082
Target:  5'- gGCGCU---GGGCGCGGUGCUgcccgcgcgGUGGc -3'
miRNA:   3'- -CGCGAgugUCUGCGCCAUGGa--------CACCu -5'
1814 5' -56 NC_001347.2 + 190518 0.68 0.911082
Target:  5'- cGCGCg-GCAGGCGCG-UACCacUGGAg -3'
miRNA:   3'- -CGCGagUGUCUGCGCcAUGGacACCU- -5'
1814 5' -56 NC_001347.2 + 164576 0.68 0.911082
Target:  5'- uGCGCgaCACGGugGCGGcg---GUGGAg -3'
miRNA:   3'- -CGCGa-GUGUCugCGCCauggaCACCU- -5'
1814 5' -56 NC_001347.2 + 145467 0.68 0.905168
Target:  5'- gGgGCUCACcGGCGUGGUACCg----- -3'
miRNA:   3'- -CgCGAGUGuCUGCGCCAUGGacaccu -5'
1814 5' -56 NC_001347.2 + 146411 0.68 0.899032
Target:  5'- cGCGCcguccgcuacuuUCGCGGACGCGGUAgCggcaGUGu- -3'
miRNA:   3'- -CGCG------------AGUGUCUGCGCCAUgGa---CACcu -5'
1814 5' -56 NC_001347.2 + 89954 0.69 0.850198
Target:  5'- uGCGC-CGCGGGgcugUGCGagGCCUGUGGGg -3'
miRNA:   3'- -CGCGaGUGUCU----GCGCcaUGGACACCU- -5'
1814 5' -56 NC_001347.2 + 47340 0.7 0.834493
Target:  5'- cGCGCUCGCGGGCGUccgagACCgauUGGAu -3'
miRNA:   3'- -CGCGAGUGUCUGCGcca--UGGac-ACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.