Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1814 | 5' | -56 | NC_001347.2 | + | 28636 | 0.76 | 0.484723 |
Target: 5'- gGCGC-CuCGGGCGCcauGUACCUGUGGAc -3' miRNA: 3'- -CGCGaGuGUCUGCGc--CAUGGACACCU- -5' |
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1814 | 5' | -56 | NC_001347.2 | + | 229470 | 0.74 | 0.60007 |
Target: 5'- cGUGCUCGCuGACGCGGguuugcuuCCUauauaGUGGAc -3' miRNA: 3'- -CGCGAGUGuCUGCGCCau------GGA-----CACCU- -5' |
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1814 | 5' | -56 | NC_001347.2 | + | 47881 | 0.72 | 0.718249 |
Target: 5'- cGUGgaCGCGGGCGUGGUGguuCgUGUGGAu -3' miRNA: 3'- -CGCgaGUGUCUGCGCCAU---GgACACCU- -5' |
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1814 | 5' | -56 | NC_001347.2 | + | 150549 | 0.72 | 0.72784 |
Target: 5'- cGUGCUCuuccaGCAGACGCGGcaUACCUGccugcagcUGGu -3' miRNA: 3'- -CGCGAG-----UGUCUGCGCC--AUGGAC--------ACCu -5' |
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1814 | 5' | -56 | NC_001347.2 | + | 56292 | 0.71 | 0.792329 |
Target: 5'- cGCGCgCACGG-CGCGGUcCCgUGaUGGAg -3' miRNA: 3'- -CGCGaGUGUCuGCGCCAuGG-AC-ACCU- -5' |
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1814 | 5' | -56 | NC_001347.2 | + | 47340 | 0.7 | 0.834493 |
Target: 5'- cGCGCUCGCGGGCGUccgagACCgauUGGAu -3' miRNA: 3'- -CGCGAGUGUCUGCGcca--UGGac-ACCU- -5' |
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1814 | 5' | -56 | NC_001347.2 | + | 89954 | 0.69 | 0.850198 |
Target: 5'- uGCGC-CGCGGGgcugUGCGagGCCUGUGGGg -3' miRNA: 3'- -CGCGaGUGUCU----GCGCcaUGGACACCU- -5' |
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1814 | 5' | -56 | NC_001347.2 | + | 146411 | 0.68 | 0.899032 |
Target: 5'- cGCGCcguccgcuacuuUCGCGGACGCGGUAgCggcaGUGu- -3' miRNA: 3'- -CGCG------------AGUGUCUGCGCCAUgGa---CACcu -5' |
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1814 | 5' | -56 | NC_001347.2 | + | 145467 | 0.68 | 0.905168 |
Target: 5'- gGgGCUCACcGGCGUGGUACCg----- -3' miRNA: 3'- -CgCGAGUGuCUGCGCCAUGGacaccu -5' |
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1814 | 5' | -56 | NC_001347.2 | + | 164576 | 0.68 | 0.911082 |
Target: 5'- uGCGCgaCACGGugGCGGcg---GUGGAg -3' miRNA: 3'- -CGCGa-GUGUCugCGCCauggaCACCU- -5' |
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1814 | 5' | -56 | NC_001347.2 | + | 193221 | 0.68 | 0.911082 |
Target: 5'- gGUGCUgGCGGcCGUGG--CCUGUGGc -3' miRNA: 3'- -CGCGAgUGUCuGCGCCauGGACACCu -5' |
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1814 | 5' | -56 | NC_001347.2 | + | 228372 | 0.68 | 0.911082 |
Target: 5'- gGCGCU---GGGCGCGGUGCUgcccgcgcgGUGGc -3' miRNA: 3'- -CGCGAgugUCUGCGCCAUGGa--------CACCu -5' |
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1814 | 5' | -56 | NC_001347.2 | + | 190518 | 0.68 | 0.911082 |
Target: 5'- cGCGCg-GCAGGCGCG-UACCacUGGAg -3' miRNA: 3'- -CGCGagUGUCUGCGCcAUGGacACCU- -5' |
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1814 | 5' | -56 | NC_001347.2 | + | 182315 | 0.68 | 0.916775 |
Target: 5'- cGUGCggGgAGGauugacgugUGCGGUGCUUGUGGAa -3' miRNA: 3'- -CGCGagUgUCU---------GCGCCAUGGACACCU- -5' |
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1814 | 5' | -56 | NC_001347.2 | + | 61357 | 0.67 | 0.926974 |
Target: 5'- gGCGCUCACGG-CGCGuuucuucGUGCCcGaGGGc -3' miRNA: 3'- -CGCGAGUGUCuGCGC-------CAUGGaCaCCU- -5' |
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1814 | 5' | -56 | NC_001347.2 | + | 138204 | 0.67 | 0.936834 |
Target: 5'- cGCuCUCACAGAaaaaaguCGCGGguuCCucguUGUGGAu -3' miRNA: 3'- -CGcGAGUGUCU-------GCGCCau-GG----ACACCU- -5' |
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1814 | 5' | -56 | NC_001347.2 | + | 127997 | 0.67 | 0.941875 |
Target: 5'- cGCGCUCA-AGACGCuGUGCCacccgGUGc- -3' miRNA: 3'- -CGCGAGUgUCUGCGcCAUGGa----CACcu -5' |
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1814 | 5' | -56 | NC_001347.2 | + | 195610 | 0.67 | 0.941875 |
Target: 5'- -aGaCUCGCGGACuCGGUGCCccggccccuggaUGUGGu -3' miRNA: 3'- cgC-GAGUGUCUGcGCCAUGG------------ACACCu -5' |
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1814 | 5' | -56 | NC_001347.2 | + | 103642 | 0.66 | 0.9458 |
Target: 5'- gGCGCUgGCAcgcGCGCGGUugCUcgaguaccggcgcGUGGu -3' miRNA: 3'- -CGCGAgUGUc--UGCGCCAugGA-------------CACCu -5' |
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1814 | 5' | -56 | NC_001347.2 | + | 215297 | 0.66 | 0.950355 |
Target: 5'- uGCGCUCACcGAgGUGGagaGCCgucguuggugGUGGGc -3' miRNA: 3'- -CGCGAGUGuCUgCGCCa--UGGa---------CACCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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