miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18146 5' -62.7 NC_004680.1 + 42485 0.66 0.400224
Target:  5'- aGUGGGuGGUGGaGCGgaUCgUGGCGUUGUc -3'
miRNA:   3'- aCGCUC-CCGCCgCGC--AG-ACCGCAGCG- -5'
18146 5' -62.7 NC_004680.1 + 36247 0.66 0.386525
Target:  5'- aGCGGuccucgccgcccugcGGGCaugGGaUGCGUCcGGCGUCGa -3'
miRNA:   3'- aCGCU---------------CCCG---CC-GCGCAGaCCGCAGCg -5'
18146 5' -62.7 NC_004680.1 + 40515 0.66 0.374795
Target:  5'- cGuCGAGGcGUGGgGC-UCUGcacGCGUCGUg -3'
miRNA:   3'- aC-GCUCC-CGCCgCGcAGAC---CGCAGCG- -5'
18146 5' -62.7 NC_004680.1 + 42293 0.66 0.374795
Target:  5'- cUG-GAGGaaGCGGCGCGgaugCUGGCcgauggugcuUCGCa -3'
miRNA:   3'- -ACgCUCC--CGCCGCGCa---GACCGc---------AGCG- -5'
18146 5' -62.7 NC_004680.1 + 9070 0.66 0.374795
Target:  5'- aGCGAGugaucuGCGGCGguuuuuCGggCUGaGCGUCGCc -3'
miRNA:   3'- aCGCUCc-----CGCCGC------GCa-GAC-CGCAGCG- -5'
18146 5' -62.7 NC_004680.1 + 33282 0.66 0.358461
Target:  5'- cGCcGGGGCGGacuuuaCGUUUGGCGUgGa -3'
miRNA:   3'- aCGcUCCCGCCgc----GCAGACCGCAgCg -5'
18146 5' -62.7 NC_004680.1 + 9836 0.66 0.358461
Target:  5'- cUGCGucgaaGGCuGGCGCGguggCUGGcCG-CGCg -3'
miRNA:   3'- -ACGCuc---CCG-CCGCGCa---GACC-GCaGCG- -5'
18146 5' -62.7 NC_004680.1 + 43737 0.66 0.350482
Target:  5'- cGCGucaucaAGGGCGGCuGCGcCggcuuucGCGUCGUc -3'
miRNA:   3'- aCGC------UCCCGCCG-CGCaGac-----CGCAGCG- -5'
18146 5' -62.7 NC_004680.1 + 6036 0.66 0.348113
Target:  5'- gGUGcGGGCgcaggucgucaaugGGCGCGUguggcugcCUGGCGUgGUg -3'
miRNA:   3'- aCGCuCCCG--------------CCGCGCA--------GACCGCAgCG- -5'
18146 5' -62.7 NC_004680.1 + 2127 0.67 0.327312
Target:  5'- cGUGGGaGGCGuguguugauGCGCGUCgugaUGGUG-CGCg -3'
miRNA:   3'- aCGCUC-CCGC---------CGCGCAG----ACCGCaGCG- -5'
18146 5' -62.7 NC_004680.1 + 25620 0.67 0.327312
Target:  5'- uUGUGGGGGUGGgcCGCGUggcGGgGUCGg -3'
miRNA:   3'- -ACGCUCCCGCC--GCGCAga-CCgCAGCg -5'
18146 5' -62.7 NC_004680.1 + 12318 0.67 0.305296
Target:  5'- gGCGGGGGCGaccgcCGCuUCgGGUGcCGCg -3'
miRNA:   3'- aCGCUCCCGCc----GCGcAGaCCGCaGCG- -5'
18146 5' -62.7 NC_004680.1 + 57528 0.68 0.298214
Target:  5'- -uUGGGuGGCGGCGCGgUUguaGGCGgCGCu -3'
miRNA:   3'- acGCUC-CCGCCGCGC-AGa--CCGCaGCG- -5'
18146 5' -62.7 NC_004680.1 + 30743 0.68 0.298214
Target:  5'- aUGCGcAGGGCGaCG-G-CUGGCagGUCGCg -3'
miRNA:   3'- -ACGC-UCCCGCcGCgCaGACCG--CAGCG- -5'
18146 5' -62.7 NC_004680.1 + 17561 0.68 0.294026
Target:  5'- gGCGuGGGUGGUGCGUgcuguugcuggggugUUcaucccuggugaGGCGUCGUu -3'
miRNA:   3'- aCGCuCCCGCCGCGCA---------------GA------------CCGCAGCG- -5'
18146 5' -62.7 NC_004680.1 + 2010 0.68 0.284433
Target:  5'- aUGCG-GGGCGGCGUGagcugaagCUGGUGg--- -3'
miRNA:   3'- -ACGCuCCCGCCGCGCa-------GACCGCagcg -5'
18146 5' -62.7 NC_004680.1 + 27096 0.68 0.284433
Target:  5'- -uUGuuGGCGGCGCGcCUGuaGUCGUc -3'
miRNA:   3'- acGCucCCGCCGCGCaGACcgCAGCG- -5'
18146 5' -62.7 NC_004680.1 + 12228 0.68 0.283758
Target:  5'- cGCGAGcgguuccGGUGGCGUGguUCcGGUGUCGg -3'
miRNA:   3'- aCGCUC-------CCGCCGCGC--AGaCCGCAGCg -5'
18146 5' -62.7 NC_004680.1 + 763 0.68 0.277734
Target:  5'- gGcCGucGGCGGUucgaGCGggCUGGCGUCGa -3'
miRNA:   3'- aC-GCucCCGCCG----CGCa-GACCGCAGCg -5'
18146 5' -62.7 NC_004680.1 + 22011 0.68 0.277071
Target:  5'- -aUGGGGGCGGCcagccacaguaagGCGUCguucggucUGGUGuUCGCg -3'
miRNA:   3'- acGCUCCCGCCG-------------CGCAG--------ACCGC-AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.