miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18149 3' -60.9 NC_004680.1 + 24721 0.66 0.48289
Target:  5'- uUCAGCUCAuCGCaaaCGGUGGUGGUGg -3'
miRNA:   3'- gAGUCGGGU-GCGga-GCUGCCACCGCg -5'
18149 3' -60.9 NC_004680.1 + 33304 0.66 0.479974
Target:  5'- -gCGGCCCgguagucguugaggACGCCggGGCGGacuuuacguuUGGCGUg -3'
miRNA:   3'- gaGUCGGG--------------UGCGGagCUGCC----------ACCGCG- -5'
18149 3' -60.9 NC_004680.1 + 42273 0.66 0.473202
Target:  5'- -gCAGCCCA-GCUguUCGGCGaucugcGUGGCGg -3'
miRNA:   3'- gaGUCGGGUgCGG--AGCUGC------CACCGCg -5'
18149 3' -60.9 NC_004680.1 + 25798 0.66 0.473202
Target:  5'- gUUGGCCCcugcucCGCCggGGCcuGUGGCGCa -3'
miRNA:   3'- gAGUCGGGu-----GCGGagCUGc-CACCGCG- -5'
18149 3' -60.9 NC_004680.1 + 27836 0.66 0.463614
Target:  5'- -gCAGCUCgGCgGCCg-GACGGUGGUGg -3'
miRNA:   3'- gaGUCGGG-UG-CGGagCUGCCACCGCg -5'
18149 3' -60.9 NC_004680.1 + 683 0.66 0.463614
Target:  5'- --aGGCCgCACGUCUCGAUGaUGagaaGCGCg -3'
miRNA:   3'- gagUCGG-GUGCGGAGCUGCcAC----CGCG- -5'
18149 3' -60.9 NC_004680.1 + 15861 0.66 0.463614
Target:  5'- -gCAGCCgUACGCCUauuucGUGGCGCc -3'
miRNA:   3'- gaGUCGG-GUGCGGAgcugcCACCGCG- -5'
18149 3' -60.9 NC_004680.1 + 11672 0.66 0.453185
Target:  5'- aCUCAGggcggCCACGgUUUGAUGGguguccuUGGCGCg -3'
miRNA:   3'- -GAGUCg----GGUGCgGAGCUGCC-------ACCGCG- -5'
18149 3' -60.9 NC_004680.1 + 26467 0.66 0.444748
Target:  5'- -gCAGaaacCCCGCGCacCUCG-UGGUGGCGg -3'
miRNA:   3'- gaGUC----GGGUGCG--GAGCuGCCACCGCg -5'
18149 3' -60.9 NC_004680.1 + 12430 0.66 0.435477
Target:  5'- -cCAGCCC-CGCUgcccaccacCGGUGGUGGCGg -3'
miRNA:   3'- gaGUCGGGuGCGGa--------GCUGCCACCGCg -5'
18149 3' -60.9 NC_004680.1 + 45182 0.66 0.42632
Target:  5'- -gCGGCUCuCGCCgCGACGacaccaacGUGGCGUc -3'
miRNA:   3'- gaGUCGGGuGCGGaGCUGC--------CACCGCG- -5'
18149 3' -60.9 NC_004680.1 + 17065 0.66 0.42632
Target:  5'- aCUCuGGCCCAgGUgUCGAUcccGGCGCa -3'
miRNA:   3'- -GAG-UCGGGUgCGgAGCUGccaCCGCG- -5'
18149 3' -60.9 NC_004680.1 + 47605 0.67 0.417277
Target:  5'- cCUCAGCcgaaCCGCGCCaccgUCGAgGcGUGG-GCu -3'
miRNA:   3'- -GAGUCG----GGUGCGG----AGCUgC-CACCgCG- -5'
18149 3' -60.9 NC_004680.1 + 56709 0.67 0.408353
Target:  5'- -aCAGCCCcaACGCCUacCGGCaauGGuUGGaCGCg -3'
miRNA:   3'- gaGUCGGG--UGCGGA--GCUG---CC-ACC-GCG- -5'
18149 3' -60.9 NC_004680.1 + 12171 0.67 0.399549
Target:  5'- ---cGCCCAgguaucCGUUcCGACGGUGGCGg -3'
miRNA:   3'- gaguCGGGU------GCGGaGCUGCCACCGCg -5'
18149 3' -60.9 NC_004680.1 + 38449 0.68 0.34143
Target:  5'- aUCGGCuCCaACGCCUC-ACGGgcagcGGCGa -3'
miRNA:   3'- gAGUCG-GG-UGCGGAGcUGCCa----CCGCg -5'
18149 3' -60.9 NC_004680.1 + 54615 0.68 0.332871
Target:  5'- gUCAGCCCgaACGCCcCGGaaccuacCGG-GGCGUu -3'
miRNA:   3'- gAGUCGGG--UGCGGaGCU-------GCCaCCGCG- -5'
18149 3' -60.9 NC_004680.1 + 5280 0.68 0.325986
Target:  5'- -gCGGCCUuguaGuCCUUGACGGUaGGUGCc -3'
miRNA:   3'- gaGUCGGGug--C-GGAGCUGCCA-CCGCG- -5'
18149 3' -60.9 NC_004680.1 + 42652 0.68 0.325986
Target:  5'- -gCGGCCCGCcugCUCGACGacGGCGCc -3'
miRNA:   3'- gaGUCGGGUGcg-GAGCUGCcaCCGCG- -5'
18149 3' -60.9 NC_004680.1 + 21853 0.69 0.317715
Target:  5'- -cCAGCCCACuuauucgGCCgCGACgaGGUGGCa- -3'
miRNA:   3'- gaGUCGGGUG-------CGGaGCUG--CCACCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.