miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18149 5' -54 NC_004680.1 + 15289 0.66 0.819142
Target:  5'- uUGAGGAugUCGCGGAUaccgcgcaGUucaGCGGUg -3'
miRNA:   3'- -ACUCCUuuGGUGCCUAg-------CAuc-CGCCG- -5'
18149 5' -54 NC_004680.1 + 45136 0.66 0.819142
Target:  5'- gGGGGAAACCcCGuGAaCc--GGCGGCu -3'
miRNA:   3'- aCUCCUUUGGuGC-CUaGcauCCGCCG- -5'
18149 5' -54 NC_004680.1 + 35976 0.66 0.809806
Target:  5'- -aAGGu-GCCGCGGc---UGGGCGGCu -3'
miRNA:   3'- acUCCuuUGGUGCCuagcAUCCGCCG- -5'
18149 5' -54 NC_004680.1 + 16623 0.66 0.809806
Target:  5'- uUGAGGGAAUCGUGGAgauuccugUCGauccgacugcUGGcGCGGCg -3'
miRNA:   3'- -ACUCCUUUGGUGCCU--------AGC----------AUC-CGCCG- -5'
18149 5' -54 NC_004680.1 + 26932 0.66 0.806969
Target:  5'- gUGGGGGuaguucuucguggcAGgCACGcGGUCGUuGGCGGg -3'
miRNA:   3'- -ACUCCU--------------UUgGUGC-CUAGCAuCCGCCg -5'
18149 5' -54 NC_004680.1 + 54964 0.66 0.806969
Target:  5'- gGAcGggGCCggcacgaucggugGCGGGUCGgaaugaaacgucGGGCGGCc -3'
miRNA:   3'- aCUcCuuUGG-------------UGCCUAGCa-----------UCCGCCG- -5'
18149 5' -54 NC_004680.1 + 9827 0.66 0.800285
Target:  5'- aUGAGGguGCUGCG--UCGaAGGCuGGCg -3'
miRNA:   3'- -ACUCCuuUGGUGCcuAGCaUCCG-CCG- -5'
18149 5' -54 NC_004680.1 + 478 0.66 0.800285
Target:  5'- aGGGGucgAAGCgGCGGAagUCGgAGGCuGCg -3'
miRNA:   3'- aCUCC---UUUGgUGCCU--AGCaUCCGcCG- -5'
18149 5' -54 NC_004680.1 + 51520 0.66 0.800285
Target:  5'- cGAGGAAgucuccccGCCACuGGU-GUAGGacgaGGCu -3'
miRNA:   3'- aCUCCUU--------UGGUGcCUAgCAUCCg---CCG- -5'
18149 5' -54 NC_004680.1 + 41664 0.66 0.800285
Target:  5'- gUGAGGu-GCUGCGGGcaGUAcaccgauucugcGGCGGCg -3'
miRNA:   3'- -ACUCCuuUGGUGCCUagCAU------------CCGCCG- -5'
18149 5' -54 NC_004680.1 + 51512 0.66 0.790589
Target:  5'- cGAGGAuga-GCGGAUCGccaAGGC-GCa -3'
miRNA:   3'- aCUCCUuuggUGCCUAGCa--UCCGcCG- -5'
18149 5' -54 NC_004680.1 + 33647 0.66 0.790589
Target:  5'- cGAGGAGuuccCCACGGcgggcgcccGUCaGgaaaccGGCGGCg -3'
miRNA:   3'- aCUCCUUu---GGUGCC---------UAG-Cau----CCGCCG- -5'
18149 5' -54 NC_004680.1 + 59180 0.67 0.770713
Target:  5'- cGuGGAGuucGCCGguguUGGGUUGUGcuuGGCGGCc -3'
miRNA:   3'- aCuCCUU---UGGU----GCCUAGCAU---CCGCCG- -5'
18149 5' -54 NC_004680.1 + 38865 0.67 0.770713
Target:  5'- gGAGGGu-CC-CGGcgCGggGGGCGGg -3'
miRNA:   3'- aCUCCUuuGGuGCCuaGCa-UCCGCCg -5'
18149 5' -54 NC_004680.1 + 47907 0.67 0.750268
Target:  5'- cGGGGAuccgacaccggAGCCGCGGGU-GUuuGuGCGGCc -3'
miRNA:   3'- aCUCCU-----------UUGGUGCCUAgCAu-C-CGCCG- -5'
18149 5' -54 NC_004680.1 + 33955 0.67 0.749233
Target:  5'- aGGGGAAGCCGaucgauccccguuCGGAcuacgacgUGUGGcGUGGCg -3'
miRNA:   3'- aCUCCUUUGGU-------------GCCUa-------GCAUC-CGCCG- -5'
18149 5' -54 NC_004680.1 + 52833 0.68 0.718731
Target:  5'- gUGAGGAAu---CGGG-CcUGGGCGGCg -3'
miRNA:   3'- -ACUCCUUugguGCCUaGcAUCCGCCG- -5'
18149 5' -54 NC_004680.1 + 17141 0.68 0.708032
Target:  5'- gUGAGGGAGCCGauguuCGGGUugaucuuguggccCGUuugaacggugagacuGGCGGCa -3'
miRNA:   3'- -ACUCCUUUGGU-----GCCUA-------------GCAu--------------CCGCCG- -5'
18149 5' -54 NC_004680.1 + 56858 0.68 0.697259
Target:  5'- gGuGGAggUCAUGucUCGcccgAGGCGGCg -3'
miRNA:   3'- aCuCCUuuGGUGCcuAGCa---UCCGCCG- -5'
18149 5' -54 NC_004680.1 + 34509 0.68 0.686423
Target:  5'- cGGGGGAGCUGggugGGAUgGU-GGCGGUg -3'
miRNA:   3'- aCUCCUUUGGUg---CCUAgCAuCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.