miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18153 5' -54.5 NC_004680.1 + 27903 0.66 0.782435
Target:  5'- gCCGAgcuGCGGCCAAccauccagcgcGUAGCcGCGCUGc -3'
miRNA:   3'- -GGUUag-CGUCGGUU-----------CGUUGcCGCGAC- -5'
18153 5' -54.5 NC_004680.1 + 16260 0.66 0.782435
Target:  5'- aCGGU-GCAGUUccGCAACGGUGCc- -3'
miRNA:   3'- gGUUAgCGUCGGuuCGUUGCCGCGac -5'
18153 5' -54.5 NC_004680.1 + 1246 0.66 0.782435
Target:  5'- aCAcGUCGaCGGCUggGCAGcCGGgGCa- -3'
miRNA:   3'- gGU-UAGC-GUCGGuuCGUU-GCCgCGac -5'
18153 5' -54.5 NC_004680.1 + 51821 0.66 0.762151
Target:  5'- ---uUCGCaauAGCCAAuGCucuCGGUGCUGc -3'
miRNA:   3'- gguuAGCG---UCGGUU-CGuu-GCCGCGAC- -5'
18153 5' -54.5 NC_004680.1 + 56148 0.66 0.751801
Target:  5'- aCCAuucgcCGCAGuCUggGCAGuCGGCGUc- -3'
miRNA:   3'- -GGUua---GCGUC-GGuuCGUU-GCCGCGac -5'
18153 5' -54.5 NC_004680.1 + 11901 0.66 0.751801
Target:  5'- aCCA--UGCGGCUgaucaguacgguGAGCAucagaACGGCGCUc -3'
miRNA:   3'- -GGUuaGCGUCGG------------UUCGU-----UGCCGCGAc -5'
18153 5' -54.5 NC_004680.1 + 33781 0.66 0.751801
Target:  5'- aCGGUCG-GGCCGGGaCAGCGGUGaCg- -3'
miRNA:   3'- gGUUAGCgUCGGUUC-GUUGCCGC-Gac -5'
18153 5' -54.5 NC_004680.1 + 4926 0.66 0.741327
Target:  5'- gCCucUCacacCGGCUGAGUAuGCGGCGCUGc -3'
miRNA:   3'- -GGuuAGc---GUCGGUUCGU-UGCCGCGAC- -5'
18153 5' -54.5 NC_004680.1 + 4569 0.66 0.730742
Target:  5'- cCUggUCGaCuGCCGguuccacuGGCuccguuACGGCGCUGu -3'
miRNA:   3'- -GGuuAGC-GuCGGU--------UCGu-----UGCCGCGAC- -5'
18153 5' -54.5 NC_004680.1 + 54419 0.66 0.730742
Target:  5'- aCAAUUGC-GCCAgAGCAacguggucauagGCGGCGUa- -3'
miRNA:   3'- gGUUAGCGuCGGU-UCGU------------UGCCGCGac -5'
18153 5' -54.5 NC_004680.1 + 52264 0.66 0.730742
Target:  5'- gCCGG-CGCAGCUcuGCGGCGaGgGCUu -3'
miRNA:   3'- -GGUUaGCGUCGGuuCGUUGC-CgCGAc -5'
18153 5' -54.5 NC_004680.1 + 40888 0.67 0.718983
Target:  5'- gUAGUCGCaccauguGGCCGggucggugagAGCAACGGCGg-- -3'
miRNA:   3'- gGUUAGCG-------UCGGU----------UCGUUGCCGCgac -5'
18153 5' -54.5 NC_004680.1 + 3682 0.67 0.715757
Target:  5'- gCGGUCGCAGCCGcauacucAGCGugauccaucuuccuGgGGaCGCUGc -3'
miRNA:   3'- gGUUAGCGUCGGU-------UCGU--------------UgCC-GCGAC- -5'
18153 5' -54.5 NC_004680.1 + 29690 0.67 0.709283
Target:  5'- cCCAAUCaCAuGCUggGCAgguGCGGgGCUc -3'
miRNA:   3'- -GGUUAGcGU-CGGuuCGU---UGCCgCGAc -5'
18153 5' -54.5 NC_004680.1 + 28889 0.67 0.698433
Target:  5'- -uGAUCGCGaucGCCuccGGUAGCGGUGCc- -3'
miRNA:   3'- ggUUAGCGU---CGGu--UCGUUGCCGCGac -5'
18153 5' -54.5 NC_004680.1 + 12604 0.67 0.698433
Target:  5'- gCGGU-GCAgGCCGgcGGC-AUGGCGCUGg -3'
miRNA:   3'- gGUUAgCGU-CGGU--UCGuUGCCGCGAC- -5'
18153 5' -54.5 NC_004680.1 + 5687 0.67 0.691891
Target:  5'- cCCGccCGCAGaCC-AGCAGCGucgccggaaguguccGCGCUGg -3'
miRNA:   3'- -GGUuaGCGUC-GGuUCGUUGC---------------CGCGAC- -5'
18153 5' -54.5 NC_004680.1 + 34497 0.67 0.684232
Target:  5'- cCCAcgUGCAGCCGGGgGAgcugggugggauggUGGCGgUGu -3'
miRNA:   3'- -GGUuaGCGUCGGUUCgUU--------------GCCGCgAC- -5'
18153 5' -54.5 NC_004680.1 + 16939 0.67 0.676548
Target:  5'- cCCAGUCGCgGGgCAGGUGcCGGUGgUGa -3'
miRNA:   3'- -GGUUAGCG-UCgGUUCGUuGCCGCgAC- -5'
18153 5' -54.5 NC_004680.1 + 4606 0.67 0.676548
Target:  5'- gCCAAggaaaacuUCGCGgacGCCAAGaAAUGGCGCg- -3'
miRNA:   3'- -GGUU--------AGCGU---CGGUUCgUUGCCGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.