miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18155 5' -58.5 NC_004680.1 + 21615 0.66 0.543693
Target:  5'- gGGUGacgcuGCAgGCguucucggccgGGGCCGGggGGg -3'
miRNA:   3'- -CCACaucu-CGUgCG-----------CCCGGCCuuCCa -5'
18155 5' -58.5 NC_004680.1 + 51644 0.67 0.523007
Target:  5'- cGUGUGGA-CugGCGGcuCCGgGAAGGUc -3'
miRNA:   3'- cCACAUCUcGugCGCCc-GGC-CUUCCA- -5'
18155 5' -58.5 NC_004680.1 + 29299 0.67 0.512778
Target:  5'- cGGUGUccucacuguucgAGGGCaACGUaaGGGCCGGGAa-- -3'
miRNA:   3'- -CCACA------------UCUCG-UGCG--CCCGGCCUUcca -5'
18155 5' -58.5 NC_004680.1 + 6663 0.67 0.492574
Target:  5'- cGUGUGGGGUA--CGGGCCGGAu--- -3'
miRNA:   3'- cCACAUCUCGUgcGCCCGGCCUucca -5'
18155 5' -58.5 NC_004680.1 + 840 0.67 0.48261
Target:  5'- cGGUGUGGAGCugcaccCGgaGGcGCCGGuucGGUg -3'
miRNA:   3'- -CCACAUCUCGu-----GCg-CC-CGGCCuu-CCA- -5'
18155 5' -58.5 NC_004680.1 + 49448 0.68 0.472744
Target:  5'- -uUGUGGAGCGCGCGaaagcagcaCUGGAAGGc -3'
miRNA:   3'- ccACAUCUCGUGCGCcc-------GGCCUUCCa -5'
18155 5' -58.5 NC_004680.1 + 42745 0.68 0.428745
Target:  5'- cGUGUAggaggcgccgucgucGAGCAgGCGGGCCGccuGGGc -3'
miRNA:   3'- cCACAU---------------CUCGUgCGCCCGGCcu-UCCa -5'
18155 5' -58.5 NC_004680.1 + 55617 0.69 0.406768
Target:  5'- gGGUGUGGuGCgaauguugauuACGCGGuGCCcGGuuGGUg -3'
miRNA:   3'- -CCACAUCuCG-----------UGCGCC-CGG-CCuuCCA- -5'
18155 5' -58.5 NC_004680.1 + 19366 0.7 0.338852
Target:  5'- cGGUgGUGGuGGUGCGCaGGGCUGGGccuuGGGUa -3'
miRNA:   3'- -CCA-CAUC-UCGUGCG-CCCGGCCU----UCCA- -5'
18155 5' -58.5 NC_004680.1 + 50500 1 0.002546
Target:  5'- gGGUGUAGAGC-CGCGGGCCGGAAGGUc -3'
miRNA:   3'- -CCACAUCUCGuGCGCCCGGCCUUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.