Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18156 | 3' | -58.6 | NC_004680.1 | + | 394 | 0.67 | 0.509 |
Target: 5'- -aGGCCgacacugauuacgGG-ACGAAUCCGCUgGCCc -3' miRNA: 3'- cgCCGGa------------CCaUGCUUAGGUGGgCGGc -5' |
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18156 | 3' | -58.6 | NC_004680.1 | + | 5281 | 0.71 | 0.308864 |
Target: 5'- aGCGGCCUuguaguccuugacGGUAgGug-CCACCaCGCCa -3' miRNA: 3'- -CGCCGGA-------------CCAUgCuuaGGUGG-GCGGc -5' |
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18156 | 3' | -58.6 | NC_004680.1 | + | 7130 | 0.67 | 0.513039 |
Target: 5'- gGUGGCgUGGcuguccccucUGgGAAagguuUCUACCCGCCGc -3' miRNA: 3'- -CGCCGgACC----------AUgCUU-----AGGUGGGCGGC- -5' |
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18156 | 3' | -58.6 | NC_004680.1 | + | 7681 | 0.7 | 0.34819 |
Target: 5'- gGCGGCCUGcagGCGGuGUUCAUCCGCg- -3' miRNA: 3'- -CGCCGGACca-UGCU-UAGGUGGGCGgc -5' |
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18156 | 3' | -58.6 | NC_004680.1 | + | 8890 | 0.66 | 0.600281 |
Target: 5'- gGCGGCCccuugaccgcgccgGG-ACGggUCU--CCGCCGg -3' miRNA: 3'- -CGCCGGa-------------CCaUGCuuAGGugGGCGGC- -5' |
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18156 | 3' | -58.6 | NC_004680.1 | + | 9952 | 0.66 | 0.596051 |
Target: 5'- gGCGGCCgugaaagcGGUacccaacgcGCGGccagCCACCgCGCCa -3' miRNA: 3'- -CGCCGGa-------CCA---------UGCUua--GGUGG-GCGGc -5' |
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18156 | 3' | -58.6 | NC_004680.1 | + | 12241 | 0.68 | 0.482106 |
Target: 5'- gGUGGCgUGGUuccggugucggugACGAAcUgGCCCGCCc -3' miRNA: 3'- -CGCCGgACCA-------------UGCUUaGgUGGGCGGc -5' |
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18156 | 3' | -58.6 | NC_004680.1 | + | 12365 | 0.68 | 0.435158 |
Target: 5'- cUGGUgCUGGcGCGggUCCA-CUGCCGg -3' miRNA: 3'- cGCCG-GACCaUGCuuAGGUgGGCGGC- -5' |
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18156 | 3' | -58.6 | NC_004680.1 | + | 12805 | 0.68 | 0.48309 |
Target: 5'- gGCGGUuuggCUGGUGCGGcucCCGCgUUGCCGa -3' miRNA: 3'- -CGCCG----GACCAUGCUua-GGUG-GGCGGC- -5' |
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18156 | 3' | -58.6 | NC_004680.1 | + | 13146 | 0.68 | 0.473294 |
Target: 5'- gGCGGCCUGG--CGGuccCCGaccggaCCGCCGc -3' miRNA: 3'- -CGCCGGACCauGCUua-GGUg-----GGCGGC- -5' |
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18156 | 3' | -58.6 | NC_004680.1 | + | 15633 | 0.67 | 0.523192 |
Target: 5'- aCGGCCUGa-ACGGuuUCCAUCCGCa- -3' miRNA: 3'- cGCCGGACcaUGCUu-AGGUGGGCGgc -5' |
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18156 | 3' | -58.6 | NC_004680.1 | + | 19511 | 0.67 | 0.513039 |
Target: 5'- gGUGGCCcgGGUgACGGcgCCGCCgGUgGu -3' miRNA: 3'- -CGCCGGa-CCA-UGCUuaGGUGGgCGgC- -5' |
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18156 | 3' | -58.6 | NC_004680.1 | + | 19712 | 0.68 | 0.473294 |
Target: 5'- gGCGGCCacGGUACG---CCACCUGgUGg -3' miRNA: 3'- -CGCCGGa-CCAUGCuuaGGUGGGCgGC- -5' |
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18156 | 3' | -58.6 | NC_004680.1 | + | 28966 | 0.66 | 0.606633 |
Target: 5'- gGCGGgCUGG-ACGuuguAGUCCACgUGCgGg -3' miRNA: 3'- -CGCCgGACCaUGC----UUAGGUGgGCGgC- -5' |
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18156 | 3' | -58.6 | NC_004680.1 | + | 29972 | 0.67 | 0.542689 |
Target: 5'- uGUGcGCCaagUGGUAUGAccagcccgagguuAUCCAgCUCGCCGa -3' miRNA: 3'- -CGC-CGG---ACCAUGCU-------------UAGGU-GGGCGGC- -5' |
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18156 | 3' | -58.6 | NC_004680.1 | + | 30788 | 0.66 | 0.596051 |
Target: 5'- cCGGCUUGGaGCGGAUCa--CCGgCGa -3' miRNA: 3'- cGCCGGACCaUGCUUAGgugGGCgGC- -5' |
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18156 | 3' | -58.6 | NC_004680.1 | + | 32632 | 0.69 | 0.420408 |
Target: 5'- uGCuGgCUGGuacUccccguacaccccacGCGGAUCCACCCGCCa -3' miRNA: 3'- -CGcCgGACC---A---------------UGCUUAGGUGGGCGGc -5' |
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18156 | 3' | -58.6 | NC_004680.1 | + | 34406 | 0.69 | 0.425904 |
Target: 5'- aGCGGCUgcggaacuUGGaccaugACGGAgugaCACCCGCCa -3' miRNA: 3'- -CGCCGG--------ACCa-----UGCUUag--GUGGGCGGc -5' |
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18156 | 3' | -58.6 | NC_004680.1 | + | 35880 | 0.67 | 0.502967 |
Target: 5'- -aGGCCgaucGGacGCGAAgCCGCCCaGCCGc -3' miRNA: 3'- cgCCGGa---CCa-UGCUUaGGUGGG-CGGC- -5' |
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18156 | 3' | -58.6 | NC_004680.1 | + | 36173 | 0.66 | 0.606633 |
Target: 5'- gGCGGCgaGGaccGCuGGUCUGCUCGCUGg -3' miRNA: 3'- -CGCCGgaCCa--UGcUUAGGUGGGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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