Results 1 - 20 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18156 | 3' | -58.6 | NC_004680.1 | + | 44025 | 0.72 | 0.254797 |
Target: 5'- uGCGGCUUGGgaugcccucgGCGAAUCCgACUgGCUGc -3' miRNA: 3'- -CGCCGGACCa---------UGCUUAGG-UGGgCGGC- -5' |
|||||||
18156 | 3' | -58.6 | NC_004680.1 | + | 7130 | 0.67 | 0.513039 |
Target: 5'- gGUGGCgUGGcuguccccucUGgGAAagguuUCUACCCGCCGc -3' miRNA: 3'- -CGCCGgACC----------AUgCUU-----AGGUGGGCGGC- -5' |
|||||||
18156 | 3' | -58.6 | NC_004680.1 | + | 19511 | 0.67 | 0.513039 |
Target: 5'- gGUGGCCcgGGUgACGGcgCCGCCgGUgGu -3' miRNA: 3'- -CGCCGGa-CCA-UGCUuaGGUGGgCGgC- -5' |
|||||||
18156 | 3' | -58.6 | NC_004680.1 | + | 42389 | 0.67 | 0.516077 |
Target: 5'- cGCGGCCagGGUugGAcucgugagcagucGauugaguggauuucgUUCAUCCGCCGc -3' miRNA: 3'- -CGCCGGa-CCAugCU-------------U---------------AGGUGGGCGGC- -5' |
|||||||
18156 | 3' | -58.6 | NC_004680.1 | + | 55008 | 0.67 | 0.523192 |
Target: 5'- gGCGGCCaGGaucaUGCGGcgCaugGCUCGCCGc -3' miRNA: 3'- -CGCCGGaCC----AUGCUuaGg--UGGGCGGC- -5' |
|||||||
18156 | 3' | -58.6 | NC_004680.1 | + | 29972 | 0.67 | 0.542689 |
Target: 5'- uGUGcGCCaagUGGUAUGAccagcccgagguuAUCCAgCUCGCCGa -3' miRNA: 3'- -CGC-CGG---ACCAUGCU-------------UAGGU-GGGCGGC- -5' |
|||||||
18156 | 3' | -58.6 | NC_004680.1 | + | 30788 | 0.66 | 0.596051 |
Target: 5'- cCGGCUUGGaGCGGAUCa--CCGgCGa -3' miRNA: 3'- cGCCGGACCaUGCUUAGgugGGCgGC- -5' |
|||||||
18156 | 3' | -58.6 | NC_004680.1 | + | 41928 | 0.66 | 0.596051 |
Target: 5'- uGCGGUgaGGUGuuCGAAccggUCACCCGCa- -3' miRNA: 3'- -CGCCGgaCCAU--GCUUa---GGUGGGCGgc -5' |
|||||||
18156 | 3' | -58.6 | NC_004680.1 | + | 36173 | 0.66 | 0.606633 |
Target: 5'- gGCGGCgaGGaccGCuGGUCUGCUCGCUGg -3' miRNA: 3'- -CGCCGgaCCa--UGcUUAGGUGGGCGGC- -5' |
|||||||
18156 | 3' | -58.6 | NC_004680.1 | + | 394 | 0.67 | 0.509 |
Target: 5'- -aGGCCgacacugauuacgGG-ACGAAUCCGCUgGCCc -3' miRNA: 3'- cgCCGGa------------CCaUGCUUAGGUGGgCGGc -5' |
|||||||
18156 | 3' | -58.6 | NC_004680.1 | + | 35880 | 0.67 | 0.502967 |
Target: 5'- -aGGCCgaucGGacGCGAAgCCGCCCaGCCGc -3' miRNA: 3'- cgCCGGa---CCa-UGCUUaGGUGGG-CGGC- -5' |
|||||||
18156 | 3' | -58.6 | NC_004680.1 | + | 7681 | 0.7 | 0.34819 |
Target: 5'- gGCGGCCUGcagGCGGuGUUCAUCCGCg- -3' miRNA: 3'- -CGCCGGACca-UGCU-UAGGUGGGCGgc -5' |
|||||||
18156 | 3' | -58.6 | NC_004680.1 | + | 32632 | 0.69 | 0.420408 |
Target: 5'- uGCuGgCUGGuacUccccguacaccccacGCGGAUCCACCCGCCa -3' miRNA: 3'- -CGcCgGACC---A---------------UGCUUAGGUGGGCGGc -5' |
|||||||
18156 | 3' | -58.6 | NC_004680.1 | + | 12365 | 0.68 | 0.435158 |
Target: 5'- cUGGUgCUGGcGCGggUCCA-CUGCCGg -3' miRNA: 3'- cGCCG-GACCaUGCuuAGGUgGGCGGC- -5' |
|||||||
18156 | 3' | -58.6 | NC_004680.1 | + | 13146 | 0.68 | 0.473294 |
Target: 5'- gGCGGCCUGG--CGGuccCCGaccggaCCGCCGc -3' miRNA: 3'- -CGCCGGACCauGCUua-GGUg-----GGCGGC- -5' |
|||||||
18156 | 3' | -58.6 | NC_004680.1 | + | 19712 | 0.68 | 0.473294 |
Target: 5'- gGCGGCCacGGUACG---CCACCUGgUGg -3' miRNA: 3'- -CGCCGGa-CCAUGCuuaGGUGGGCgGC- -5' |
|||||||
18156 | 3' | -58.6 | NC_004680.1 | + | 12241 | 0.68 | 0.482106 |
Target: 5'- gGUGGCgUGGUuccggugucggugACGAAcUgGCCCGCCc -3' miRNA: 3'- -CGCCGgACCA-------------UGCUUaGgUGGGCGGc -5' |
|||||||
18156 | 3' | -58.6 | NC_004680.1 | + | 12805 | 0.68 | 0.48309 |
Target: 5'- gGCGGUuuggCUGGUGCGGcucCCGCgUUGCCGa -3' miRNA: 3'- -CGCCG----GACCAUGCUua-GGUG-GGCGGC- -5' |
|||||||
18156 | 3' | -58.6 | NC_004680.1 | + | 40810 | 0.67 | 0.492983 |
Target: 5'- cCGGCCacaUGGUGCGAcuaCCACggugugcgggUCGCCGa -3' miRNA: 3'- cGCCGG---ACCAUGCUua-GGUG----------GGCGGC- -5' |
|||||||
18156 | 3' | -58.6 | NC_004680.1 | + | 50890 | 1.1 | 0.000544 |
Target: 5'- uGCGGCCUGGUACGAAUCCACCCGCCGu -3' miRNA: 3'- -CGCCGGACCAUGCUUAGGUGGGCGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home