miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18157 3' -56.5 NC_004680.1 + 10059 0.66 0.700118
Target:  5'- aGGGUGCGGuucaaguucucCAGaCGCacACgGGACGCa -3'
miRNA:   3'- gUCUACGCU-----------GUC-GCGguUGgCCUGCG- -5'
18157 3' -56.5 NC_004680.1 + 44033 0.66 0.700118
Target:  5'- gGGAUGCccuCGGCGaauCCGACUGGcUGCg -3'
miRNA:   3'- gUCUACGcu-GUCGC---GGUUGGCCuGCG- -5'
18157 3' -56.5 NC_004680.1 + 35634 0.66 0.700118
Target:  5'- cCGGAUGau-UGGCGCCAugCcaaaGACGCa -3'
miRNA:   3'- -GUCUACgcuGUCGCGGUugGc---CUGCG- -5'
18157 3' -56.5 NC_004680.1 + 59299 0.66 0.700118
Target:  5'- uCAGGUGUucGACccauGCGCCucggcgcggGACuUGGGCGCg -3'
miRNA:   3'- -GUCUACG--CUGu---CGCGG---------UUG-GCCUGCG- -5'
18157 3' -56.5 NC_004680.1 + 24883 0.66 0.699053
Target:  5'- uGGAUaacacuaGUGGCGGUGCCGccGgCGGugGUg -3'
miRNA:   3'- gUCUA-------CGCUGUCGCGGU--UgGCCugCG- -5'
18157 3' -56.5 NC_004680.1 + 37159 0.66 0.689443
Target:  5'- aGGAcGCcaaccuGGCGGCuGCCAGCCGGGaGUg -3'
miRNA:   3'- gUCUaCG------CUGUCG-CGGUUGGCCUgCG- -5'
18157 3' -56.5 NC_004680.1 + 3224 0.66 0.689443
Target:  5'- -uGAUGCcgGACAGCGCgAACCaGuCGg -3'
miRNA:   3'- guCUACG--CUGUCGCGgUUGGcCuGCg -5'
18157 3' -56.5 NC_004680.1 + 9305 0.66 0.689443
Target:  5'- aCAGcacGCGcCAccGCGCCAuugACCGG-CGCg -3'
miRNA:   3'- -GUCua-CGCuGU--CGCGGU---UGGCCuGCG- -5'
18157 3' -56.5 NC_004680.1 + 43728 0.66 0.689443
Target:  5'- aAGG-GCGGCuGCGCCGGCUuu-CGCg -3'
miRNA:   3'- gUCUaCGCUGuCGCGGUUGGccuGCG- -5'
18157 3' -56.5 NC_004680.1 + 35994 0.66 0.678715
Target:  5'- cCAGAUucgaucGCGGacaaGGUGCCGcgGCUGGGCGg -3'
miRNA:   3'- -GUCUA------CGCUg---UCGCGGU--UGGCCUGCg -5'
18157 3' -56.5 NC_004680.1 + 11884 0.66 0.678715
Target:  5'- gGGGuUGCaGACGGCGCC--CCGGGgagaGCg -3'
miRNA:   3'- gUCU-ACG-CUGUCGCGGuuGGCCUg---CG- -5'
18157 3' -56.5 NC_004680.1 + 11210 0.66 0.678715
Target:  5'- cCAGAaGCGGCAGaUGacgaaCGGCCGcGGCGUu -3'
miRNA:   3'- -GUCUaCGCUGUC-GCg----GUUGGC-CUGCG- -5'
18157 3' -56.5 NC_004680.1 + 47932 0.66 0.678715
Target:  5'- ----aGCGACccGGCcaaccgccgcaGCCAGCCGG-CGCu -3'
miRNA:   3'- gucuaCGCUG--UCG-----------CGGUUGGCCuGCG- -5'
18157 3' -56.5 NC_004680.1 + 25715 0.66 0.667944
Target:  5'- uGGGUGCGGCgucGGCGaCGGCgGGgAUGCc -3'
miRNA:   3'- gUCUACGCUG---UCGCgGUUGgCC-UGCG- -5'
18157 3' -56.5 NC_004680.1 + 4222 0.66 0.664706
Target:  5'- gCAGAccGCGGCGgacGCGCCGuugacuACCGGAaguugaucgucacuCGCg -3'
miRNA:   3'- -GUCUa-CGCUGU---CGCGGU------UGGCCU--------------GCG- -5'
18157 3' -56.5 NC_004680.1 + 12456 0.66 0.65714
Target:  5'- cCGGAccCGGCAguggacccGCGCCAgcACCaGACGCg -3'
miRNA:   3'- -GUCUacGCUGU--------CGCGGU--UGGcCUGCG- -5'
18157 3' -56.5 NC_004680.1 + 16922 0.66 0.650646
Target:  5'- aCGGAUGUGgacccguccccagucGCGGgGCagguGCCGGugGUg -3'
miRNA:   3'- -GUCUACGC---------------UGUCgCGgu--UGGCCugCG- -5'
18157 3' -56.5 NC_004680.1 + 12213 0.66 0.647397
Target:  5'- ----cGCGGCAGCGUUccccgcgagcgguuCCGGugGCg -3'
miRNA:   3'- gucuaCGCUGUCGCGGuu------------GGCCugCG- -5'
18157 3' -56.5 NC_004680.1 + 13141 0.66 0.646313
Target:  5'- -uGAUggGCGGCcuGGCGguccCCGACCGGAcCGCc -3'
miRNA:   3'- guCUA--CGCUG--UCGC----GGUUGGCCU-GCG- -5'
18157 3' -56.5 NC_004680.1 + 1645 0.66 0.646313
Target:  5'- gAGAUGCGACGGCuGUCGuggucACUGaGAuUGCg -3'
miRNA:   3'- gUCUACGCUGUCG-CGGU-----UGGC-CU-GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.