miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18157 5' -54.8 NC_004680.1 + 30694 0.66 0.812432
Target:  5'- aCUGUgaGGCCGGcCGAuccuGUCCGggCUGc -3'
miRNA:   3'- -GGCG--UCGGCCaGCUu---UAGGCaaGGCa -5'
18157 5' -54.8 NC_004680.1 + 25065 0.66 0.803097
Target:  5'- gUGgGGCCGGUCGGGAUCgGguaaCCc- -3'
miRNA:   3'- gGCgUCGGCCAGCUUUAGgCaa--GGca -5'
18157 5' -54.8 NC_004680.1 + 29223 0.66 0.793588
Target:  5'- aCCGCucuAGUCGc-CGAAG-CCGUUCCGg -3'
miRNA:   3'- -GGCG---UCGGCcaGCUUUaGGCAAGGCa -5'
18157 5' -54.8 NC_004680.1 + 34336 0.66 0.774091
Target:  5'- uCCGCAGCCGcUCGugcggaacacGAUCCGgugauccCCGUu -3'
miRNA:   3'- -GGCGUCGGCcAGCu---------UUAGGCaa-----GGCA- -5'
18157 5' -54.8 NC_004680.1 + 13236 0.66 0.764123
Target:  5'- gCgGCGGuCCGGUCGggGaCCGccaggCCGc -3'
miRNA:   3'- -GgCGUC-GGCCAGCuuUaGGCaa---GGCa -5'
18157 5' -54.8 NC_004680.1 + 47991 0.66 0.764123
Target:  5'- cCCGCGGCUccgGuGUCGGAuccCCGUaCCGg -3'
miRNA:   3'- -GGCGUCGG---C-CAGCUUua-GGCAaGGCa -5'
18157 5' -54.8 NC_004680.1 + 11121 0.67 0.754025
Target:  5'- gCCGCGGCCGuUCGucAUCUGccgcUUCUGg -3'
miRNA:   3'- -GGCGUCGGCcAGCuuUAGGC----AAGGCa -5'
18157 5' -54.8 NC_004680.1 + 13318 0.67 0.722003
Target:  5'- gCCGCGGCCGGUcccCGAAAUggacucgCCGcgUCUa- -3'
miRNA:   3'- -GGCGUCGGCCA---GCUUUA-------GGCa-AGGca -5'
18157 5' -54.8 NC_004680.1 + 12164 0.67 0.712536
Target:  5'- gCGCuGCCGcccaGguAUCCGUUCCGa -3'
miRNA:   3'- gGCGuCGGCcag-CuuUAGGCAAGGCa -5'
18157 5' -54.8 NC_004680.1 + 35971 0.68 0.701945
Target:  5'- gCCGCGGCUGGgCGGcuUCgCGU-CCGa -3'
miRNA:   3'- -GGCGUCGGCCaGCUuuAG-GCAaGGCa -5'
18157 5' -54.8 NC_004680.1 + 44124 0.68 0.680575
Target:  5'- cCCGCAGCCaGUCG-GAUUCG--CCGa -3'
miRNA:   3'- -GGCGUCGGcCAGCuUUAGGCaaGGCa -5'
18157 5' -54.8 NC_004680.1 + 7165 0.68 0.648212
Target:  5'- cCCGCcGCUuGUCGGguGAUCCGUUgCCGc -3'
miRNA:   3'- -GGCGuCGGcCAGCU--UUAGGCAA-GGCa -5'
18157 5' -54.8 NC_004680.1 + 31955 0.69 0.626548
Target:  5'- uCCGCGGCaCGGUCGGucagauacucgGAUgUGUUCgGg -3'
miRNA:   3'- -GGCGUCG-GCCAGCU-----------UUAgGCAAGgCa -5'
18157 5' -54.8 NC_004680.1 + 12110 0.72 0.430418
Target:  5'- cCCGUAgccauaggaauGCCGGUCGAAGaUCGcUCCGUa -3'
miRNA:   3'- -GGCGU-----------CGGCCAGCUUUaGGCaAGGCA- -5'
18157 5' -54.8 NC_004680.1 + 28182 0.79 0.177125
Target:  5'- uCCGCGGCCGGUCGuggacacCCGgcCCGUg -3'
miRNA:   3'- -GGCGUCGGCCAGCuuua---GGCaaGGCA- -5'
18157 5' -54.8 NC_004680.1 + 51211 1.1 0.001304
Target:  5'- cCCGCAGCCGGUCGAAAUCCGUUCCGUg -3'
miRNA:   3'- -GGCGUCGGCCAGCUUUAGGCAAGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.