miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18159 3' -53 NC_004680.1 + 29195 0.66 0.857028
Target:  5'- gGUUgccgCGGCGUUCCGcgccgauagacauCAGCAGUgacaccacugcggcGCCg -3'
miRNA:   3'- -CAGa---GCCGCAAGGUu------------GUCGUCAa-------------CGG- -5'
18159 3' -53 NC_004680.1 + 22077 0.66 0.848461
Target:  5'- gGUCcggCGGCGUUCgAGCcGguGUUuCCg -3'
miRNA:   3'- -CAGa--GCCGCAAGgUUGuCguCAAcGG- -5'
18159 3' -53 NC_004680.1 + 54806 0.66 0.84672
Target:  5'- --aUC-GCGUuccccgcUCCAACAGCcaggaguAGUUGCCg -3'
miRNA:   3'- cagAGcCGCA-------AGGUUGUCG-------UCAACGG- -5'
18159 3' -53 NC_004680.1 + 42374 0.66 0.839661
Target:  5'- aUCUCGGCGcauUUCCG-CGGCcagGGUUGg- -3'
miRNA:   3'- cAGAGCCGC---AAGGUuGUCG---UCAACgg -5'
18159 3' -53 NC_004680.1 + 4768 0.66 0.825118
Target:  5'- cGUCUCGaacuuuCGUUCCAguucuucgauccgggACAGCGGgucgucGCCg -3'
miRNA:   3'- -CAGAGCc-----GCAAGGU---------------UGUCGUCaa----CGG- -5'
18159 3' -53 NC_004680.1 + 57694 0.67 0.806191
Target:  5'- --gUCGGUGUUCCcgGACGGCgaucgagucuuguucGGUgaugGCCa -3'
miRNA:   3'- cagAGCCGCAAGG--UUGUCG---------------UCAa---CGG- -5'
18159 3' -53 NC_004680.1 + 43131 0.67 0.782494
Target:  5'- uUCUCGGCGagCCuGCAcCAGUgGUCg -3'
miRNA:   3'- cAGAGCCGCaaGGuUGUcGUCAaCGG- -5'
18159 3' -53 NC_004680.1 + 25353 0.67 0.771314
Target:  5'- -gUUCGGCGUcaagCuCGGCGGUAGUcgcggcgcguuucUGCCg -3'
miRNA:   3'- caGAGCCGCAa---G-GUUGUCGUCA-------------ACGG- -5'
18159 3' -53 NC_004680.1 + 15594 0.67 0.762032
Target:  5'- --aUCGGCGacgugUCCAGCAGUGGauuggUGCg -3'
miRNA:   3'- cagAGCCGCa----AGGUUGUCGUCa----ACGg -5'
18159 3' -53 NC_004680.1 + 25710 0.68 0.75159
Target:  5'- ---gCGGCGUcggCGACGGCGGggaUGCCg -3'
miRNA:   3'- cagaGCCGCAag-GUUGUCGUCa--ACGG- -5'
18159 3' -53 NC_004680.1 + 27368 0.68 0.719558
Target:  5'- -aCUUGGCGaggUUCuCGGCGGCAGcgucGCCg -3'
miRNA:   3'- caGAGCCGC---AAG-GUUGUCGUCaa--CGG- -5'
18159 3' -53 NC_004680.1 + 10136 0.71 0.542533
Target:  5'- -cCUCaaGCGcUUCAugACAGCAGUUGCCg -3'
miRNA:   3'- caGAGc-CGCaAGGU--UGUCGUCAACGG- -5'
18159 3' -53 NC_004680.1 + 37987 0.72 0.488204
Target:  5'- aGUCUCaGGCGcacgCCGguacgcauccucgGCGGCAGUcaUGCCg -3'
miRNA:   3'- -CAGAG-CCGCaa--GGU-------------UGUCGUCA--ACGG- -5'
18159 3' -53 NC_004680.1 + 26182 0.73 0.458469
Target:  5'- ---gUGGCGUUCCAGcCGGCGGg-GCCg -3'
miRNA:   3'- cagaGCCGCAAGGUU-GUCGUCaaCGG- -5'
18159 3' -53 NC_004680.1 + 53342 1.11 0.001288
Target:  5'- gGUCUCGGCGUUCCAACAGCAGUUGCCc -3'
miRNA:   3'- -CAGAGCCGCAAGGUUGUCGUCAACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.