miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18159 5' -53.6 NC_004680.1 + 22717 0.66 0.854428
Target:  5'- cCACCGccACCggaacCGUGCaaaaggcuuacgGGAACAgugguUCGGCg -3'
miRNA:   3'- cGUGGU--UGGa----GCACG------------CCUUGU-----AGCCG- -5'
18159 5' -53.6 NC_004680.1 + 27539 0.66 0.845933
Target:  5'- cGCGCCAGgCa-GcGCGGGACc-CGGCg -3'
miRNA:   3'- -CGUGGUUgGagCaCGCCUUGuaGCCG- -5'
18159 5' -53.6 NC_004680.1 + 14099 0.66 0.837214
Target:  5'- gGCACCGguagugaacucgGCC-CGgacuauCGGGGCAUCGGg -3'
miRNA:   3'- -CGUGGU------------UGGaGCac----GCCUUGUAGCCg -5'
18159 5' -53.6 NC_004680.1 + 26180 0.66 0.837214
Target:  5'- gGCGuuCCAGCCg---GCGGGGCcgCGGg -3'
miRNA:   3'- -CGU--GGUUGGagcaCGCCUUGuaGCCg -5'
18159 5' -53.6 NC_004680.1 + 11318 0.66 0.834556
Target:  5'- gGCGgCAACgUCGUGUcauacggcaacaccGGuGCAUcCGGCa -3'
miRNA:   3'- -CGUgGUUGgAGCACG--------------CCuUGUA-GCCG- -5'
18159 5' -53.6 NC_004680.1 + 56297 0.66 0.828281
Target:  5'- cGCaACC-ACCUgGUGCGcauGGCAUCcgGGCg -3'
miRNA:   3'- -CG-UGGuUGGAgCACGCc--UUGUAG--CCG- -5'
18159 5' -53.6 NC_004680.1 + 6734 0.66 0.828281
Target:  5'- gGCGCCGGgUUUGgugGCGGAGCugCGGa -3'
miRNA:   3'- -CGUGGUUgGAGCa--CGCCUUGuaGCCg -5'
18159 5' -53.6 NC_004680.1 + 42407 0.66 0.819142
Target:  5'- cGgGCC-ACCUCGUucuGCGaAGCAccaUCGGCc -3'
miRNA:   3'- -CgUGGuUGGAGCA---CGCcUUGU---AGCCG- -5'
18159 5' -53.6 NC_004680.1 + 56372 0.66 0.819142
Target:  5'- cGCACCAGgugguugcgUUUCGUGCcgaugcucauGGAGCggguGUCGGUg -3'
miRNA:   3'- -CGUGGUU---------GGAGCACG----------CCUUG----UAGCCG- -5'
18159 5' -53.6 NC_004680.1 + 39717 0.66 0.819142
Target:  5'- cCugCGGCgCUcCGUGCGGcGCucccugCGGCg -3'
miRNA:   3'- cGugGUUG-GA-GCACGCCuUGua----GCCG- -5'
18159 5' -53.6 NC_004680.1 + 39921 0.66 0.819142
Target:  5'- cCugCGGCgCUcCGUGCGGcGCucucugCGGCg -3'
miRNA:   3'- cGugGUUG-GA-GCACGCCuUGua----GCCG- -5'
18159 5' -53.6 NC_004680.1 + 56067 0.66 0.809806
Target:  5'- gGUGCCggUUUCgGUGCGGcugGGCAgcguuggaUCGGCg -3'
miRNA:   3'- -CGUGGuuGGAG-CACGCC---UUGU--------AGCCG- -5'
18159 5' -53.6 NC_004680.1 + 50049 0.66 0.809806
Target:  5'- --gUCGAUCUCG-GCGGcGACGUgGGCc -3'
miRNA:   3'- cguGGUUGGAGCaCGCC-UUGUAgCCG- -5'
18159 5' -53.6 NC_004680.1 + 17237 0.67 0.800285
Target:  5'- aGCgGCUGAuCCUgGUgGCGGGACcugCGGCg -3'
miRNA:   3'- -CG-UGGUU-GGAgCA-CGCCUUGua-GCCG- -5'
18159 5' -53.6 NC_004680.1 + 21761 0.67 0.794488
Target:  5'- aGUGCC-ACCUCGUcGCGGccgaauaagugggcuGGCAU-GGCg -3'
miRNA:   3'- -CGUGGuUGGAGCA-CGCC---------------UUGUAgCCG- -5'
18159 5' -53.6 NC_004680.1 + 57050 0.67 0.780728
Target:  5'- uCAUCGGCCUCGUGC---ACAUCGa- -3'
miRNA:   3'- cGUGGUUGGAGCACGccuUGUAGCcg -5'
18159 5' -53.6 NC_004680.1 + 22842 0.67 0.770713
Target:  5'- aCACCuuCCg---GCGGAACAaaUCGGUu -3'
miRNA:   3'- cGUGGuuGGagcaCGCCUUGU--AGCCG- -5'
18159 5' -53.6 NC_004680.1 + 39379 0.67 0.760556
Target:  5'- uGCACCAgggcgGCCagugggCGUGCuGAGCAuuccggguagUCGGUg -3'
miRNA:   3'- -CGUGGU-----UGGa-----GCACGcCUUGU----------AGCCG- -5'
18159 5' -53.6 NC_004680.1 + 33740 0.67 0.760556
Target:  5'- cGUACUGGCCU--UGCGGGaagacacggGCAUgGGCa -3'
miRNA:   3'- -CGUGGUUGGAgcACGCCU---------UGUAgCCG- -5'
18159 5' -53.6 NC_004680.1 + 22669 0.68 0.750268
Target:  5'- cCACCGGCUUCGgGUGGGugGg-GGCc -3'
miRNA:   3'- cGUGGUUGGAGCaCGCCUugUagCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.