miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18163 3' -55.3 NC_004680.1 + 30026 0.66 0.672266
Target:  5'- cGUGGUGCGCGGcAUG-CGggUCAcCGUc -3'
miRNA:   3'- -UACCACGCGCC-UGCuGCaaAGUcGUA- -5'
18163 3' -55.3 NC_004680.1 + 56617 0.67 0.627785
Target:  5'- -aGG-GCGaGGGCGAUGUcUCGGCGg -3'
miRNA:   3'- uaCCaCGCgCCUGCUGCAaAGUCGUa -5'
18163 3' -55.3 NC_004680.1 + 11463 0.67 0.616648
Target:  5'- -cGGaUGCGCGGGCGAa---UCAGUAc -3'
miRNA:   3'- uaCC-ACGCGCCUGCUgcaaAGUCGUa -5'
18163 3' -55.3 NC_004680.1 + 19446 0.67 0.594427
Target:  5'- -gGGUGCGCGG-UGAgCaUUUCGGCGa -3'
miRNA:   3'- uaCCACGCGCCuGCU-GcAAAGUCGUa -5'
18163 3' -55.3 NC_004680.1 + 24738 0.67 0.594427
Target:  5'- gGUGGUG-GUGGugGugGUggUGGCAc -3'
miRNA:   3'- -UACCACgCGCCugCugCAaaGUCGUa -5'
18163 3' -55.3 NC_004680.1 + 56056 0.68 0.572336
Target:  5'- -cGGUGCGgcUGGGCaGCGUUggaUCGGCGUa -3'
miRNA:   3'- uaCCACGC--GCCUGcUGCAA---AGUCGUA- -5'
18163 3' -55.3 NC_004680.1 + 49695 0.68 0.572336
Target:  5'- -aGaGUGCGCgcuuGGGCGACGaacUCGGCAUu -3'
miRNA:   3'- uaC-CACGCG----CCUGCUGCaa-AGUCGUA- -5'
18163 3' -55.3 NC_004680.1 + 28729 0.68 0.565745
Target:  5'- uUGGUGUGCGuagucgcgccaccacGGCGGgGUUUCAcGCAUg -3'
miRNA:   3'- uACCACGCGC---------------CUGCUgCAAAGU-CGUA- -5'
18163 3' -55.3 NC_004680.1 + 30739 0.68 0.561361
Target:  5'- uUGGaUGCGCaGGGCGACGgc-UGGCAg -3'
miRNA:   3'- uACC-ACGCG-CCUGCUGCaaaGUCGUa -5'
18163 3' -55.3 NC_004680.1 + 56447 0.68 0.550445
Target:  5'- -aGGaGCGCGGAC-ACGUaguugUCGGCAa -3'
miRNA:   3'- uaCCaCGCGCCUGcUGCAa----AGUCGUa -5'
18163 3' -55.3 NC_004680.1 + 46165 0.7 0.455977
Target:  5'- gGUGGUcgGCGaGGGCGugGUgUCGGCGg -3'
miRNA:   3'- -UACCA--CGCgCCUGCugCAaAGUCGUa -5'
18163 3' -55.3 NC_004680.1 + 1116 1.03 0.002243
Target:  5'- gAUGGUGCGCGGACGACGUUUCAGCAUu -3'
miRNA:   3'- -UACCACGCGCCUGCUGCAAAGUCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.