miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18163 5' -55.8 NC_004680.1 + 54789 0.66 0.670812
Target:  5'- --uUGUgGAgGGCGUCgGUGAUGCGguCg -3'
miRNA:   3'- aauACGgCU-CCGUAG-CACUGCGCguG- -5'
18163 5' -55.8 NC_004680.1 + 36019 0.66 0.670812
Target:  5'- ---gGCCGAGGCc-----ACGCGCGCg -3'
miRNA:   3'- aauaCGGCUCCGuagcacUGCGCGUG- -5'
18163 5' -55.8 NC_004680.1 + 9216 0.66 0.659759
Target:  5'- ---cGCCGGucaauGGCGcgGUGGCGCGUGCu -3'
miRNA:   3'- aauaCGGCU-----CCGUagCACUGCGCGUG- -5'
18163 5' -55.8 NC_004680.1 + 18255 0.66 0.659759
Target:  5'- --cUGCCGGGGUGaC-UGGCGUGCAa -3'
miRNA:   3'- aauACGGCUCCGUaGcACUGCGCGUg -5'
18163 5' -55.8 NC_004680.1 + 2592 0.66 0.648679
Target:  5'- -cGUGCU--GGCGUCGUGAUGacgGUACg -3'
miRNA:   3'- aaUACGGcuCCGUAGCACUGCg--CGUG- -5'
18163 5' -55.8 NC_004680.1 + 25784 0.66 0.637584
Target:  5'- ---cGCCGGGGCc---UGugGCGCAg -3'
miRNA:   3'- aauaCGGCUCCGuagcACugCGCGUg -5'
18163 5' -55.8 NC_004680.1 + 23592 0.67 0.615389
Target:  5'- -gGUGCCGAGGgGUUu--GCGgGCGCa -3'
miRNA:   3'- aaUACGGCUCCgUAGcacUGCgCGUG- -5'
18163 5' -55.8 NC_004680.1 + 43437 0.67 0.58223
Target:  5'- ---cGCggaggGAGGCGUCGUGAUGUGUg- -3'
miRNA:   3'- aauaCGg----CUCCGUAGCACUGCGCGug -5'
18163 5' -55.8 NC_004680.1 + 40689 0.68 0.56032
Target:  5'- ---gGCgCGGGGCucugcgcacGUCGUGGCGgGCAa -3'
miRNA:   3'- aauaCG-GCUCCG---------UAGCACUGCgCGUg -5'
18163 5' -55.8 NC_004680.1 + 14995 0.68 0.56032
Target:  5'- --uUGaUCGAGGCGUCGggugcUGACcCGCGCa -3'
miRNA:   3'- aauAC-GGCUCCGUAGC-----ACUGcGCGUG- -5'
18163 5' -55.8 NC_004680.1 + 42093 0.68 0.538645
Target:  5'- ---cGCCGGGcGCAgagGUGGgGCGCAUg -3'
miRNA:   3'- aauaCGGCUC-CGUag-CACUgCGCGUG- -5'
18163 5' -55.8 NC_004680.1 + 9567 0.68 0.535417
Target:  5'- ---gGCUGGGGCG-CGUGGCGguucggcugcuggcCGCGCg -3'
miRNA:   3'- aauaCGGCUCCGUaGCACUGC--------------GCGUG- -5'
18163 5' -55.8 NC_004680.1 + 1098 0.68 0.527913
Target:  5'- -aAUGCucCGGGGUcUCGUGAUGgUGCGCg -3'
miRNA:   3'- aaUACG--GCUCCGuAGCACUGC-GCGUG- -5'
18163 5' -55.8 NC_004680.1 + 1930 0.68 0.517262
Target:  5'- gUUAUGCCGAuGCAUUggcgacugGUGACGCgGUGCu -3'
miRNA:   3'- -AAUACGGCUcCGUAG--------CACUGCG-CGUG- -5'
18163 5' -55.8 NC_004680.1 + 37896 0.69 0.465429
Target:  5'- ---cGCCGAGGaugCGUaccGGCGUGCGCc -3'
miRNA:   3'- aauaCGGCUCCguaGCA---CUGCGCGUG- -5'
18163 5' -55.8 NC_004680.1 + 49606 0.69 0.455385
Target:  5'- -aAUGCCGAGuuCGUCGcccaaGCGCGCACu -3'
miRNA:   3'- aaUACGGCUCc-GUAGCac---UGCGCGUG- -5'
18163 5' -55.8 NC_004680.1 + 2137 0.71 0.379573
Target:  5'- gUGUGuuGAuGcGCGUCGUGAUGgUGCGCg -3'
miRNA:   3'- aAUACggCU-C-CGUAGCACUGC-GCGUG- -5'
18163 5' -55.8 NC_004680.1 + 1164 1.08 0.000953
Target:  5'- uUUAUGCCGAGGCAUCGUGACGCGCACg -3'
miRNA:   3'- -AAUACGGCUCCGUAGCACUGCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.