miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18164 5' -55.5 NC_004680.1 + 42623 0.66 0.727546
Target:  5'- -cGGAG-CAUCCgacuucuuuGGCGauGUCGCCGGUGg -3'
miRNA:   3'- guCUUCaGUGGG---------UCGU--CAGUGGCCAC- -5'
18164 5' -55.5 NC_004680.1 + 19504 0.66 0.71691
Target:  5'- uGGuguuGGUgGCCCGGguGacggcgcCGCCGGUGg -3'
miRNA:   3'- gUCu---UCAgUGGGUCguCa------GUGGCCAC- -5'
18164 5' -55.5 NC_004680.1 + 14616 0.66 0.70619
Target:  5'- -cGAAGUCGCCUGGCGa--ACCGGc- -3'
miRNA:   3'- guCUUCAGUGGGUCGUcagUGGCCac -5'
18164 5' -55.5 NC_004680.1 + 33754 0.66 0.70296
Target:  5'- gGGAAGaCacgggcaugggcauGCCC-GCAGUC-CCGGUGg -3'
miRNA:   3'- gUCUUCaG--------------UGGGuCGUCAGuGGCCAC- -5'
18164 5' -55.5 NC_004680.1 + 17121 0.66 0.695398
Target:  5'- ---cGGUUACaCGGUcGUCACCGGUGa -3'
miRNA:   3'- gucuUCAGUGgGUCGuCAGUGGCCAC- -5'
18164 5' -55.5 NC_004680.1 + 8205 0.67 0.673642
Target:  5'- gAG-GGUUACCCGGCGGUgaaGCUGGa- -3'
miRNA:   3'- gUCuUCAGUGGGUCGUCAg--UGGCCac -5'
18164 5' -55.5 NC_004680.1 + 32990 0.67 0.651729
Target:  5'- aGGggGUCACCCuaCGGuUCACCcuacGGUGc -3'
miRNA:   3'- gUCuuCAGUGGGucGUC-AGUGG----CCAC- -5'
18164 5' -55.5 NC_004680.1 + 21684 0.67 0.628644
Target:  5'- gCAGc-GUCACCCcGCucgaaacGGUCACCGGcUGa -3'
miRNA:   3'- -GUCuuCAGUGGGuCG-------UCAGUGGCC-AC- -5'
18164 5' -55.5 NC_004680.1 + 6087 0.68 0.607766
Target:  5'- -uGAAGUCGa--AGCAGUCacgcuuACCGGUGg -3'
miRNA:   3'- guCUUCAGUgggUCGUCAG------UGGCCAC- -5'
18164 5' -55.5 NC_004680.1 + 45663 0.68 0.607766
Target:  5'- gCAGGAGUCACCgGGguuuccGUCGgUGGUGg -3'
miRNA:   3'- -GUCUUCAGUGGgUCgu----CAGUgGCCAC- -5'
18164 5' -55.5 NC_004680.1 + 2761 0.7 0.484
Target:  5'- gCAGAAGuUCGCCCGuccgugcuuuguGCAGUCgucgucccggcgcagGCUGGUGa -3'
miRNA:   3'- -GUCUUC-AGUGGGU------------CGUCAG---------------UGGCCAC- -5'
18164 5' -55.5 NC_004680.1 + 27692 0.71 0.420988
Target:  5'- aCGucGGUCACCCAGCGGUgauccgagaUGCCGGg- -3'
miRNA:   3'- -GUcuUCAGUGGGUCGUCA---------GUGGCCac -5'
18164 5' -55.5 NC_004680.1 + 13029 0.75 0.246543
Target:  5'- aAGAAGcaUUACCCAGC-GUCAgCGGUGa -3'
miRNA:   3'- gUCUUC--AGUGGGUCGuCAGUgGCCAC- -5'
18164 5' -55.5 NC_004680.1 + 3776 1.07 0.001342
Target:  5'- gCAGAAGUCACCCAGCAGUCACCGGUGc -3'
miRNA:   3'- -GUCUUCAGUGGGUCGUCAGUGGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.