miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18165 3' -61.9 NC_004680.1 + 4115 0.66 0.422434
Target:  5'- cAGCGcGCAgUUCuCGuUGCCGGUCAagacGCGgCg -3'
miRNA:   3'- -UCGC-CGU-GAG-GC-ACGGCCAGU----CGCgG- -5'
18165 3' -61.9 NC_004680.1 + 16690 0.66 0.422434
Target:  5'- gGGCGGUA-UCgGUGuuGGUguGC-CCg -3'
miRNA:   3'- -UCGCCGUgAGgCACggCCAguCGcGG- -5'
18165 3' -61.9 NC_004680.1 + 847 0.66 0.422434
Target:  5'- gAGCuGCAC-CCGgaggcGCCGGuUCGGUGUg -3'
miRNA:   3'- -UCGcCGUGaGGCa----CGGCC-AGUCGCGg -5'
18165 3' -61.9 NC_004680.1 + 7002 0.66 0.41346
Target:  5'- cGCaGGCGCaUCuCGUGgaguuCgGGUCGGCGCa -3'
miRNA:   3'- uCG-CCGUG-AG-GCAC-----GgCCAGUCGCGg -5'
18165 3' -61.9 NC_004680.1 + 27680 0.66 0.404605
Target:  5'- cAGCGGUgaUCCGagaUGCCGG--GGCgGCCa -3'
miRNA:   3'- -UCGCCGugAGGC---ACGGCCagUCG-CGG- -5'
18165 3' -61.9 NC_004680.1 + 50168 0.66 0.39587
Target:  5'- cGCGGuCGCaCCGgGCCGGUCcuaccGGCugcucGCCg -3'
miRNA:   3'- uCGCC-GUGaGGCaCGGCCAG-----UCG-----CGG- -5'
18165 3' -61.9 NC_004680.1 + 29189 0.66 0.386403
Target:  5'- cGCGGCGUUCCGcGCCGauagacaucagcaGUgacaccacugCGGCGCCg -3'
miRNA:   3'- uCGCCGUGAGGCaCGGC-------------CA----------GUCGCGG- -5'
18165 3' -61.9 NC_004680.1 + 29062 0.67 0.362173
Target:  5'- cAGU-GCugUCaGUGuCCGG-CGGCGCCg -3'
miRNA:   3'- -UCGcCGugAGgCAC-GGCCaGUCGCGG- -5'
18165 3' -61.9 NC_004680.1 + 15279 0.67 0.362173
Target:  5'- cGCGGauacCGCgcaguucagCgGUGCCGGUCcauGCGCUg -3'
miRNA:   3'- uCGCC----GUGa--------GgCACGGCCAGu--CGCGG- -5'
18165 3' -61.9 NC_004680.1 + 19677 0.67 0.362173
Target:  5'- cAGCGGUACccgCCGcGCCGcccUCAGCGaCa -3'
miRNA:   3'- -UCGCCGUGa--GGCaCGGCc--AGUCGCgG- -5'
18165 3' -61.9 NC_004680.1 + 16164 0.67 0.354066
Target:  5'- gAGCGGUucuaUCCGacaGCC--UCGGCGCCg -3'
miRNA:   3'- -UCGCCGug--AGGCa--CGGccAGUCGCGG- -5'
18165 3' -61.9 NC_004680.1 + 37848 0.67 0.353262
Target:  5'- gGGCcGCACUCCGUGUguggagaucgaagUGGUCAccggcaugacuGcCGCCg -3'
miRNA:   3'- -UCGcCGUGAGGCACG-------------GCCAGU-----------C-GCGG- -5'
18165 3' -61.9 NC_004680.1 + 33534 0.67 0.338239
Target:  5'- uGCGGUGCggaUCGccGCCGGUUuccugacgGGCGCCc -3'
miRNA:   3'- uCGCCGUGa--GGCa-CGGCCAG--------UCGCGG- -5'
18165 3' -61.9 NC_004680.1 + 57240 0.67 0.329756
Target:  5'- cGGCGGCGCcggggaaUCCGUGCCauucGUCGaacacgagaauGCaGCCg -3'
miRNA:   3'- -UCGCCGUG-------AGGCACGGc---CAGU-----------CG-CGG- -5'
18165 3' -61.9 NC_004680.1 + 3194 0.67 0.328993
Target:  5'- cGuCGGCgaccaagACUCCGcugccgaugcugaUGCCGGaCAGCGCg -3'
miRNA:   3'- uC-GCCG-------UGAGGC-------------ACGGCCaGUCGCGg -5'
18165 3' -61.9 NC_004680.1 + 31952 0.68 0.322933
Target:  5'- cGGUGcGCACUCCcccagGUGCCugucucagccggGGUCGGUGUg -3'
miRNA:   3'- -UCGC-CGUGAGG-----CACGG------------CCAGUCGCGg -5'
18165 3' -61.9 NC_004680.1 + 24721 0.68 0.322933
Target:  5'- cAGauGCAC-CCGUGUCGGUUAccGCaGCCc -3'
miRNA:   3'- -UCgcCGUGaGGCACGGCCAGU--CG-CGG- -5'
18165 3' -61.9 NC_004680.1 + 49444 0.68 0.315476
Target:  5'- cGCGGUACUCCc-GCCaGUCcucccuGGCGCg -3'
miRNA:   3'- uCGCCGUGAGGcaCGGcCAG------UCGCGg -5'
18165 3' -61.9 NC_004680.1 + 13237 0.68 0.300954
Target:  5'- uGCGGCGgUCCG-GUCGGggacCGCCa -3'
miRNA:   3'- uCGCCGUgAGGCaCGGCCagucGCGG- -5'
18165 3' -61.9 NC_004680.1 + 57508 0.68 0.29319
Target:  5'- aGGCGGCGCUgCGguugaacUGCUGGguuccaGGCgGCCg -3'
miRNA:   3'- -UCGCCGUGAgGC-------ACGGCCag----UCG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.