miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18165 5' -53.5 NC_004680.1 + 16774 0.65 0.82938
Target:  5'- gCGGGCacaccaacaccgauACCGcCCUGCGGCc-GCAAc- -3'
miRNA:   3'- -GCCCG--------------UGGCuGGACGUUGaaCGUUuc -5'
18165 5' -53.5 NC_004680.1 + 41654 0.66 0.822918
Target:  5'- gCGGGCaguacACCGAuUCUGCGGCggcGaCGAAGa -3'
miRNA:   3'- -GCCCG-----UGGCU-GGACGUUGaa-C-GUUUC- -5'
18165 5' -53.5 NC_004680.1 + 16243 0.66 0.813513
Target:  5'- aGGGCAagaCGACg-GCGACggUGCAGu- -3'
miRNA:   3'- gCCCGUg--GCUGgaCGUUGa-ACGUUuc -5'
18165 5' -53.5 NC_004680.1 + 37026 0.66 0.801969
Target:  5'- cCGGGuCACCGcAUCgcaguucgcgcgGCAACU-GCAGGGa -3'
miRNA:   3'- -GCCC-GUGGC-UGGa-----------CGUUGAaCGUUUC- -5'
18165 5' -53.5 NC_004680.1 + 54019 0.67 0.774042
Target:  5'- uCGGGUAggUCGAauCCgaGCAGCUUGCAcAAGa -3'
miRNA:   3'- -GCCCGU--GGCU--GGa-CGUUGAACGU-UUC- -5'
18165 5' -53.5 NC_004680.1 + 11350 0.67 0.763768
Target:  5'- -cGGCAgCGuCCUGCGGCaUGCcAGGa -3'
miRNA:   3'- gcCCGUgGCuGGACGUUGaACGuUUC- -5'
18165 5' -53.5 NC_004680.1 + 51 0.67 0.742816
Target:  5'- uGGGguCUGACCUGCGguuuucgccacACUUGUu--- -3'
miRNA:   3'- gCCCguGGCUGGACGU-----------UGAACGuuuc -5'
18165 5' -53.5 NC_004680.1 + 25683 0.68 0.710553
Target:  5'- aGGGCGa-GugCUGCGG-UUGCGAGGa -3'
miRNA:   3'- gCCCGUggCugGACGUUgAACGUUUC- -5'
18165 5' -53.5 NC_004680.1 + 15420 0.68 0.710553
Target:  5'- -cGGCACCGugCUGCAAgccCUgucGCGGGa -3'
miRNA:   3'- gcCCGUGGCugGACGUU---GAa--CGUUUc -5'
18165 5' -53.5 NC_004680.1 + 4730 0.68 0.699624
Target:  5'- gCGGGUcgucGCCGAuuuuuuCCUGCGACUcGCGc-- -3'
miRNA:   3'- -GCCCG----UGGCU------GGACGUUGAaCGUuuc -5'
18165 5' -53.5 NC_004680.1 + 10311 0.69 0.65535
Target:  5'- aCGGGCGCUGAgCUguccGCGAUgaUGCAGAa -3'
miRNA:   3'- -GCCCGUGGCUgGA----CGUUGa-ACGUUUc -5'
18165 5' -53.5 NC_004680.1 + 12971 0.69 0.644199
Target:  5'- uGGGCuggacCUGGCCUugggcgGCGGCUUGCGGGu -3'
miRNA:   3'- gCCCGu----GGCUGGA------CGUUGAACGUUUc -5'
18165 5' -53.5 NC_004680.1 + 12789 0.71 0.544512
Target:  5'- uGGGCGCCGAUCgcgGCGACcugGCc--- -3'
miRNA:   3'- gCCCGUGGCUGGa--CGUUGaa-CGuuuc -5'
18165 5' -53.5 NC_004680.1 + 11807 0.72 0.460366
Target:  5'- gGGGCGCCG-UCUGCAACccccggGCAGu- -3'
miRNA:   3'- gCCCGUGGCuGGACGUUGaa----CGUUuc -5'
18165 5' -53.5 NC_004680.1 + 3947 1.1 0.001382
Target:  5'- gCGGGCACCGACCUGCAACUUGCAAAGa -3'
miRNA:   3'- -GCCCGUGGCUGGACGUUGAACGUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.