miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18166 3' -57.5 NC_004680.1 + 36034 0.66 0.669013
Target:  5'- uUCGaUGGCGGCGagCAGUUCgggugaugcgccccgGCgGCCa -3'
miRNA:   3'- -GGC-GUCGCCGCagGUCAAGa--------------UGgCGG- -5'
18166 3' -57.5 NC_004680.1 + 34533 0.66 0.667952
Target:  5'- aCCGCGGCGGCGaaCA---CU-CCGCg -3'
miRNA:   3'- -GGCGUCGCCGCagGUcaaGAuGGCGg -5'
18166 3' -57.5 NC_004680.1 + 7686 0.66 0.667952
Target:  5'- cCUGCAgGCGGUGUUCAuccgcgacaaccGUggUGCCGCg -3'
miRNA:   3'- -GGCGU-CGCCGCAGGU------------CAagAUGGCGg -5'
18166 3' -57.5 NC_004680.1 + 10816 0.66 0.667952
Target:  5'- gCGCAGCGGgGaUCAGUgcagC-ACUGUCg -3'
miRNA:   3'- gGCGUCGCCgCaGGUCAa---GaUGGCGG- -5'
18166 3' -57.5 NC_004680.1 + 2938 0.66 0.667952
Target:  5'- aCCgGCGGCGGCGaaCCGGUcaCUACaGCa -3'
miRNA:   3'- -GG-CGUCGCCGCa-GGUCAa-GAUGgCGg -5'
18166 3' -57.5 NC_004680.1 + 49468 0.66 0.667952
Target:  5'- aUCGCAGCcaagcaacGGCGcugUCgCGGUaCUcCCGCCa -3'
miRNA:   3'- -GGCGUCG--------CCGC---AG-GUCAaGAuGGCGG- -5'
18166 3' -57.5 NC_004680.1 + 12277 0.66 0.65732
Target:  5'- gCCGCGGacggGGCGg------CUACCGCCa -3'
miRNA:   3'- -GGCGUCg---CCGCaggucaaGAUGGCGG- -5'
18166 3' -57.5 NC_004680.1 + 52026 0.66 0.65732
Target:  5'- gUGCAGCGcguguCGUCCAGUgCUGCuuuCGCg -3'
miRNA:   3'- gGCGUCGCc----GCAGGUCAaGAUG---GCGg -5'
18166 3' -57.5 NC_004680.1 + 2850 0.66 0.65732
Target:  5'- aUGCuGUaGUGaCCGGUUCgccGCCGCCg -3'
miRNA:   3'- gGCGuCGcCGCaGGUCAAGa--UGGCGG- -5'
18166 3' -57.5 NC_004680.1 + 11771 0.66 0.646667
Target:  5'- gCCGguGCGGCcgguguGUCCAug---ACCGCUc -3'
miRNA:   3'- -GGCguCGCCG------CAGGUcaagaUGGCGG- -5'
18166 3' -57.5 NC_004680.1 + 13410 0.66 0.646667
Target:  5'- aCGCGGCGa-GUCCAuUUCggggACCgGCCg -3'
miRNA:   3'- gGCGUCGCcgCAGGUcAAGa---UGG-CGG- -5'
18166 3' -57.5 NC_004680.1 + 25909 0.66 0.636001
Target:  5'- gCCGUGGUGGCGgCC------GCCGCCg -3'
miRNA:   3'- -GGCGUCGCCGCaGGucaagaUGGCGG- -5'
18166 3' -57.5 NC_004680.1 + 8927 0.66 0.625332
Target:  5'- aCGCGGCGGCGaCaCAcgcUUACCGUCc -3'
miRNA:   3'- gGCGUCGCCGCaG-GUcaaGAUGGCGG- -5'
18166 3' -57.5 NC_004680.1 + 56104 0.66 0.625332
Target:  5'- aUGguGCGGUcugugguucGUCCGGUUUUGCguucucggUGCCg -3'
miRNA:   3'- gGCguCGCCG---------CAGGUCAAGAUG--------GCGG- -5'
18166 3' -57.5 NC_004680.1 + 43637 0.66 0.625332
Target:  5'- -aGCAGCGGCagc--GUUCccgGCCGCCc -3'
miRNA:   3'- ggCGUCGCCGcagguCAAGa--UGGCGG- -5'
18166 3' -57.5 NC_004680.1 + 25573 0.66 0.625332
Target:  5'- cCCGCcacGCGGUGUCUGaugUCUuacACCGCa -3'
miRNA:   3'- -GGCGu--CGCCGCAGGUca-AGA---UGGCGg -5'
18166 3' -57.5 NC_004680.1 + 4226 0.67 0.60402
Target:  5'- aCCGCGGCGGaCGcgCC-GUUgaCUACCGg- -3'
miRNA:   3'- -GGCGUCGCC-GCa-GGuCAA--GAUGGCgg -5'
18166 3' -57.5 NC_004680.1 + 3902 0.67 0.593394
Target:  5'- gUCGCAGCGGCacuccgugCCGG-UC-AgCGCCg -3'
miRNA:   3'- -GGCGUCGCCGca------GGUCaAGaUgGCGG- -5'
18166 3' -57.5 NC_004680.1 + 27930 0.67 0.582798
Target:  5'- gCC-CAGC-GCGUCCAccaccgUCcgGCCGCCg -3'
miRNA:   3'- -GGcGUCGcCGCAGGUca----AGa-UGGCGG- -5'
18166 3' -57.5 NC_004680.1 + 22782 0.67 0.572241
Target:  5'- -gGCGGUGGCGUUCAGguaggaggCggcgACgGCCc -3'
miRNA:   3'- ggCGUCGCCGCAGGUCaa------Ga---UGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.