miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18166 5' -55.2 NC_004680.1 + 34058 0.66 0.760621
Target:  5'- gCGGCAcaccaccuCGAcauuGCUGCGCGCagcggGUGUg -3'
miRNA:   3'- gGCCGUu-------GCUcu--UGACGCGCGa----CACA- -5'
18166 5' -55.2 NC_004680.1 + 24235 0.66 0.760621
Target:  5'- aCCGGCAcgGCGGGuguGCUGUauguggugGUGCcGUGa -3'
miRNA:   3'- -GGCCGU--UGCUCu--UGACG--------CGCGaCACa -5'
18166 5' -55.2 NC_004680.1 + 44239 0.66 0.749347
Target:  5'- gCGGCAGCGGGAaaaccuacaccgcACU-CGCGCUa--- -3'
miRNA:   3'- gGCCGUUGCUCU-------------UGAcGCGCGAcaca -5'
18166 5' -55.2 NC_004680.1 + 49717 0.66 0.71898
Target:  5'- cUCGGCGaccagcucgggcACGAGAG-UGCGCGCU-UGg -3'
miRNA:   3'- -GGCCGU------------UGCUCUUgACGCGCGAcACa -5'
18166 5' -55.2 NC_004680.1 + 36172 0.66 0.71898
Target:  5'- -gGGCGGCGAGGACcgcuggucUGCuCGCUGg-- -3'
miRNA:   3'- ggCCGUUGCUCUUG--------ACGcGCGACaca -5'
18166 5' -55.2 NC_004680.1 + 8775 0.67 0.708329
Target:  5'- aCGGCAACGAGAuggucCUGCcgGCGgaGa-- -3'
miRNA:   3'- gGCCGUUGCUCUu----GACG--CGCgaCaca -5'
18166 5' -55.2 NC_004680.1 + 58398 0.67 0.675978
Target:  5'- gCCGGCAG-GuGAGCcaGUGgGCUGUGg -3'
miRNA:   3'- -GGCCGUUgCuCUUGa-CGCgCGACACa -5'
18166 5' -55.2 NC_004680.1 + 56622 0.68 0.632315
Target:  5'- aCGGCAggGCGAGGGCgaUGUcucggcggacaGCGCUgGUGUg -3'
miRNA:   3'- gGCCGU--UGCUCUUG--ACG-----------CGCGA-CACA- -5'
18166 5' -55.2 NC_004680.1 + 15190 0.68 0.610442
Target:  5'- aCCGGCAcCGcuGAACUGCGCGgUa--- -3'
miRNA:   3'- -GGCCGUuGCu-CUUGACGCGCgAcaca -5'
18166 5' -55.2 NC_004680.1 + 40567 0.74 0.283126
Target:  5'- gUGGCGugGGGcuCUGCGCGCgucGUGg -3'
miRNA:   3'- gGCCGUugCUCuuGACGCGCGa--CACa -5'
18166 5' -55.2 NC_004680.1 + 4033 1.1 0.000949
Target:  5'- aCCGGCAACGAGAACUGCGCGCUGUGUg -3'
miRNA:   3'- -GGCCGUUGCUCUUGACGCGCGACACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.