miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18167 5' -49.1 NC_004680.1 + 16909 0.66 0.964704
Target:  5'- gGUGUGGgACccaacGGAuguGGACCCGUCCc -3'
miRNA:   3'- -CGUACCgUGua---CCUu--UUUGGGUAGGc -5'
18167 5' -49.1 NC_004680.1 + 48090 0.66 0.96089
Target:  5'- cGCuuUGGCGCGUGGGcGGAugUCAUgagcgCCGg -3'
miRNA:   3'- -CGu-ACCGUGUACCU-UUUugGGUA-----GGC- -5'
18167 5' -49.1 NC_004680.1 + 54750 0.67 0.952429
Target:  5'- gGUGUGGCgaagguggGCAUGGGAucACCUccCCGa -3'
miRNA:   3'- -CGUACCG--------UGUACCUUuuUGGGuaGGC- -5'
18167 5' -49.1 NC_004680.1 + 41099 0.67 0.952429
Target:  5'- gGCGcGGCGCGUGGu-GGugCCAUgUGu -3'
miRNA:   3'- -CGUaCCGUGUACCuuUUugGGUAgGC- -5'
18167 5' -49.1 NC_004680.1 + 19092 0.67 0.947769
Target:  5'- uGCGUGGC-CGUGuGGcgGAUuugccgaaCCAUCCGa -3'
miRNA:   3'- -CGUACCGuGUAC-CUuuUUG--------GGUAGGC- -5'
18167 5' -49.1 NC_004680.1 + 12407 0.67 0.947769
Target:  5'- cGUcUGGUGCGUGGGcgccuAACCCAgccCCGc -3'
miRNA:   3'- -CGuACCGUGUACCUuu---UUGGGUa--GGC- -5'
18167 5' -49.1 NC_004680.1 + 6565 0.67 0.937569
Target:  5'- cGCAUGuGCAgGUGGuGGGGACgUAUUCGa -3'
miRNA:   3'- -CGUAC-CGUgUACC-UUUUUGgGUAGGC- -5'
18167 5' -49.1 NC_004680.1 + 56312 0.68 0.926178
Target:  5'- cGCAUGGCAUccGGGcguuACaCCAUCUu -3'
miRNA:   3'- -CGUACCGUGuaCCUuuu-UG-GGUAGGc -5'
18167 5' -49.1 NC_004680.1 + 57237 0.68 0.913588
Target:  5'- ---cGGCGCcgGGGAAuccGugCCAUUCGu -3'
miRNA:   3'- cguaCCGUGuaCCUUU---UugGGUAGGC- -5'
18167 5' -49.1 NC_004680.1 + 33057 0.68 0.913588
Target:  5'- ---cGGCGCGuUGGAAGAACgC-UCCGu -3'
miRNA:   3'- cguaCCGUGU-ACCUUUUUGgGuAGGC- -5'
18167 5' -49.1 NC_004680.1 + 28415 0.68 0.906845
Target:  5'- aGCAgcGGCA-AUGGAuuuGCCCAUCgGg -3'
miRNA:   3'- -CGUa-CCGUgUACCUuuuUGGGUAGgC- -5'
18167 5' -49.1 NC_004680.1 + 31405 0.69 0.899808
Target:  5'- aGCGUGGcCGCGUGGAGGGAgCacggucacuaGUUCGg -3'
miRNA:   3'- -CGUACC-GUGUACCUUUUUgGg---------UAGGC- -5'
18167 5' -49.1 NC_004680.1 + 17221 0.69 0.892479
Target:  5'- gGUGUGGCGCAaucGGAGcgGCUgAUCCu -3'
miRNA:   3'- -CGUACCGUGUa--CCUUuuUGGgUAGGc -5'
18167 5' -49.1 NC_004680.1 + 12619 0.69 0.8688
Target:  5'- gGCAUGGCGC-UGGAcgcGAuggcACCCGgcgCUGg -3'
miRNA:   3'- -CGUACCGUGuACCU---UUu---UGGGUa--GGC- -5'
18167 5' -49.1 NC_004680.1 + 4274 0.7 0.824125
Target:  5'- aGCAUGGCGa--GGuuGGGCCgGUCCu -3'
miRNA:   3'- -CGUACCGUguaCCuuUUUGGgUAGGc -5'
18167 5' -49.1 NC_004680.1 + 24297 0.72 0.741917
Target:  5'- ---cGGUGCcgGGAAGGgugguGCCCAUCCa -3'
miRNA:   3'- cguaCCGUGuaCCUUUU-----UGGGUAGGc -5'
18167 5' -49.1 NC_004680.1 + 41855 0.72 0.741917
Target:  5'- gGCAUGGCGCuUGGAcGGGGCagGUCCa -3'
miRNA:   3'- -CGUACCGUGuACCU-UUUUGggUAGGc -5'
18167 5' -49.1 NC_004680.1 + 33941 0.73 0.673714
Target:  5'- gGUGUGGCACAaGGAGGGGaagccgaucgaucCCCGUUCGg -3'
miRNA:   3'- -CGUACCGUGUaCCUUUUU-------------GGGUAGGC- -5'
18167 5' -49.1 NC_004680.1 + 20652 0.75 0.57203
Target:  5'- gGCAUGGUGC-UGGAGAuuguugacccGGCCCAUCgGc -3'
miRNA:   3'- -CGUACCGUGuACCUUU----------UUGGGUAGgC- -5'
18167 5' -49.1 NC_004680.1 + 4390 1.11 0.003408
Target:  5'- gGCAUGGCACAUGGAAAAACCCAUCCGc -3'
miRNA:   3'- -CGUACCGUGUACCUUUUUGGGUAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.