miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18168 3' -56.7 NC_004680.1 + 37846 0.66 0.692784
Target:  5'- uGGGGCCGcacuccguguGUGGAgaucgaaguggucACCGGCA--UGACUg -3'
miRNA:   3'- -CCUCGGU----------CACCU-------------UGGCCGUcaGCUGG- -5'
18168 3' -56.7 NC_004680.1 + 56895 0.66 0.683239
Target:  5'- cGGuGCCGGUGGggUucaGGCuGagGGCg -3'
miRNA:   3'- -CCuCGGUCACCuuGg--CCGuCagCUGg -5'
18168 3' -56.7 NC_004680.1 + 39372 0.66 0.67259
Target:  5'- gGGcGGCCAGUGGGcguGCUgagcauuccgGGUAGUCGGu- -3'
miRNA:   3'- -CC-UCGGUCACCU---UGG----------CCGUCAGCUgg -5'
18168 3' -56.7 NC_004680.1 + 16947 0.66 0.67259
Target:  5'- cGGGGCa---GGuGCCGGUGGugacUCGACCg -3'
miRNA:   3'- -CCUCGgucaCCuUGGCCGUC----AGCUGG- -5'
18168 3' -56.7 NC_004680.1 + 33630 0.67 0.651193
Target:  5'- cGGGcGCCcGUcaGGaAACCGGCGG-CGAUCc -3'
miRNA:   3'- -CCU-CGGuCA--CC-UUGGCCGUCaGCUGG- -5'
18168 3' -56.7 NC_004680.1 + 31059 0.67 0.651193
Target:  5'- -aAGCCAGgacGuGAACCaGCAGUgCGACg -3'
miRNA:   3'- ccUCGGUCa--C-CUUGGcCGUCA-GCUGg -5'
18168 3' -56.7 NC_004680.1 + 8950 0.67 0.651193
Target:  5'- uGGuGCCAG-GGAugugugGCgGGC-GUgGACCg -3'
miRNA:   3'- -CCuCGGUCaCCU------UGgCCGuCAgCUGG- -5'
18168 3' -56.7 NC_004680.1 + 12308 0.67 0.640464
Target:  5'- cGA-CCAGUGGGG-CGGgGG-CGACCg -3'
miRNA:   3'- cCUcGGUCACCUUgGCCgUCaGCUGG- -5'
18168 3' -56.7 NC_004680.1 + 49351 0.67 0.640464
Target:  5'- gGGAcgcGCCAG-GGAggACUGGCGGgaguaccgCGACa -3'
miRNA:   3'- -CCU---CGGUCaCCU--UGGCCGUCa-------GCUGg -5'
18168 3' -56.7 NC_004680.1 + 11770 0.67 0.640464
Target:  5'- --uGCCGGUGcGGCCGGUGuGUCcauGACCg -3'
miRNA:   3'- ccuCGGUCACcUUGGCCGU-CAG---CUGG- -5'
18168 3' -56.7 NC_004680.1 + 58742 0.67 0.629729
Target:  5'- cGGGUUGG-GGAGCC-GCGGUCG-CCg -3'
miRNA:   3'- cCUCGGUCaCCUUGGcCGUCAGCuGG- -5'
18168 3' -56.7 NC_004680.1 + 41113 0.67 0.618995
Target:  5'- uGGuGCCAuguGUGGAgguugACCGGUacGGcgaaaucaUCGACCa -3'
miRNA:   3'- -CCuCGGU---CACCU-----UGGCCG--UC--------AGCUGG- -5'
18168 3' -56.7 NC_004680.1 + 48608 0.67 0.617922
Target:  5'- uGAGCCgcccgaAGUGGAugacccgACCGGgCAG-CGGCUu -3'
miRNA:   3'- cCUCGG------UCACCU-------UGGCC-GUCaGCUGG- -5'
18168 3' -56.7 NC_004680.1 + 25057 0.67 0.608272
Target:  5'- cGGuGgCGGUGGGGCCGGuCGGgaUCGgguaACCc -3'
miRNA:   3'- -CCuCgGUCACCUUGGCC-GUC--AGC----UGG- -5'
18168 3' -56.7 NC_004680.1 + 24536 0.67 0.608272
Target:  5'- aGGAGgCGGUGGuGgCGGUGG-CGGCg -3'
miRNA:   3'- -CCUCgGUCACCuUgGCCGUCaGCUGg -5'
18168 3' -56.7 NC_004680.1 + 41820 0.67 0.597569
Target:  5'- -cGGCgGGcGGggUCGGCGGUguagUGGCCg -3'
miRNA:   3'- ccUCGgUCaCCuuGGCCGUCA----GCUGG- -5'
18168 3' -56.7 NC_004680.1 + 21310 0.67 0.594363
Target:  5'- gGGGGCCacgguguucgcgguGGUGGcguggGACCGcGCGggcucagccccGUCGGCCa -3'
miRNA:   3'- -CCUCGG--------------UCACC-----UUGGC-CGU-----------CAGCUGG- -5'
18168 3' -56.7 NC_004680.1 + 40870 0.68 0.586894
Target:  5'- cGGGUCGGUGaGAGCaaCGGCGGUCaugucgauGACUg -3'
miRNA:   3'- cCUCGGUCAC-CUUG--GCCGUCAG--------CUGG- -5'
18168 3' -56.7 NC_004680.1 + 19243 0.68 0.544629
Target:  5'- --cGCC-GUGGAuacagguuCCGGCGGU-GACCa -3'
miRNA:   3'- ccuCGGuCACCUu-------GGCCGUCAgCUGG- -5'
18168 3' -56.7 NC_004680.1 + 24174 0.69 0.523859
Target:  5'- cGAGUCGGUGcaaaaguCCGGCAccgCGACCg -3'
miRNA:   3'- cCUCGGUCACcuu----GGCCGUca-GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.