miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18168 5' -52.9 NC_004680.1 + 52270 0.66 0.829592
Target:  5'- cGGcuuGCCGGCGC-AGCUCUGcgGCgAGg -3'
miRNA:   3'- -CCu--CGGUUGCGuUCGAGGCuuUGgUU- -5'
18168 5' -52.9 NC_004680.1 + 57781 0.66 0.820239
Target:  5'- uGGAGCUAGCGUuccgcgucuGCUgCG-GACCAAc -3'
miRNA:   3'- -CCUCGGUUGCGuu-------CGAgGCuUUGGUU- -5'
18168 5' -52.9 NC_004680.1 + 44875 0.66 0.810678
Target:  5'- cGGAGUaccgaaaacaAGCGCuGGCggCCGAGACCc- -3'
miRNA:   3'- -CCUCGg---------UUGCGuUCGa-GGCUUUGGuu -5'
18168 5' -52.9 NC_004680.1 + 33662 0.67 0.790978
Target:  5'- aGGGCCAGCGCAGGCcgaGGAGuuccCCAc -3'
miRNA:   3'- cCUCGGUUGCGUUCGaggCUUU----GGUu -5'
18168 5' -52.9 NC_004680.1 + 1045 0.67 0.760153
Target:  5'- -cAGCaCAccgaACGCAAGCUCUGAcACCu- -3'
miRNA:   3'- ccUCG-GU----UGCGUUCGAGGCUuUGGuu -5'
18168 5' -52.9 NC_004680.1 + 43708 0.67 0.749587
Target:  5'- aGGGGCCAcCGUugcAGUUCCuGGACCGc -3'
miRNA:   3'- -CCUCGGUuGCGu--UCGAGGcUUUGGUu -5'
18168 5' -52.9 NC_004680.1 + 59225 0.67 0.748523
Target:  5'- uGGGUCGaacaccugaucgaACGCGGGC-CCGAGAUCGAa -3'
miRNA:   3'- cCUCGGU-------------UGCGUUCGaGGCUUUGGUU- -5'
18168 5' -52.9 NC_004680.1 + 35558 0.68 0.695121
Target:  5'- cGAGcCCGACGCGAGUaCCuGAAACuCAGc -3'
miRNA:   3'- cCUC-GGUUGCGUUCGaGG-CUUUG-GUU- -5'
18168 5' -52.9 NC_004680.1 + 25781 0.69 0.636792
Target:  5'- cGGGGCCugugGCGCAGGCguguuuguagaUGAGGCCGGu -3'
miRNA:   3'- -CCUCGGu---UGCGUUCGag---------GCUUUGGUU- -5'
18168 5' -52.9 NC_004680.1 + 21453 0.7 0.605232
Target:  5'- uGGAGa--ACGCAGGCUCCGGcguugcucGCCAGa -3'
miRNA:   3'- -CCUCgguUGCGUUCGAGGCUu-------UGGUU- -5'
18168 5' -52.9 NC_004680.1 + 28553 0.7 0.593996
Target:  5'- gGGAGCCGccuucggguGCGUGugguucauccacAGCUCgGAAACCAc -3'
miRNA:   3'- -CCUCGGU---------UGCGU------------UCGAGgCUUUGGUu -5'
18168 5' -52.9 NC_004680.1 + 4606 0.71 0.560526
Target:  5'- cGGAGCUuGCGUuGGCUCCucAACCu- -3'
miRNA:   3'- -CCUCGGuUGCGuUCGAGGcuUUGGuu -5'
18168 5' -52.9 NC_004680.1 + 4411 0.71 0.527598
Target:  5'- gGGGGUCAGCGCuggauGCuUCUGggGCCu- -3'
miRNA:   3'- -CCUCGGUUGCGuu---CG-AGGCuuUGGuu -5'
18168 5' -52.9 NC_004680.1 + 25920 0.72 0.495416
Target:  5'- cGGGCCAACGCAAcuaUCCGccGCCAu -3'
miRNA:   3'- cCUCGGUUGCGUUcg-AGGCuuUGGUu -5'
18168 5' -52.9 NC_004680.1 + 4529 1.08 0.001784
Target:  5'- aGGAGCCAACGCAAGCUCCGAAACCAAc -3'
miRNA:   3'- -CCUCGGUUGCGUUCGAGGCUUUGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.