miRNA display CGI

Results 1 - 8 of 8 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
18169	3'	-53.4	NC_004680.1	+	35111	0.66	0.797658
	Target:  5'- -gGGCACgUcaacGCCG-CAAGGACUAgAc -3' miRNA:   3'- caCCGUGgA----UGGCaGUUCCUGAUgUu -5'
18169	3'	-53.4	NC_004680.1	+	9232	0.67	0.756617
	Target:  5'- gGUGGCGCgUGCUGUucgCGGGGGCcGCu- -3' miRNA:   3'- -CACCGUGgAUGGCA---GUUCCUGaUGuu -5'
18169	3'	-53.4	NC_004680.1	+	6386	0.67	0.745991
	Target:  5'- -cGGC-CCUGCCGUCAGcGAuaccgcCUGCGAu -3' miRNA:   3'- caCCGuGGAUGGCAGUUcCU------GAUGUU- -5'
18169	3'	-53.4	NC_004680.1	+	23208	0.67	0.713435
	Target:  5'- -aGGCACCUA-UGUgGAGGGCgGCAu -3' miRNA:   3'- caCCGUGGAUgGCAgUUCCUGaUGUu -5'
18169	3'	-53.4	NC_004680.1	+	14810	0.67	0.702397
	Target:  5'- -cGGgGCUUGCCacucCAGGGGCUACAu -3' miRNA:   3'- caCCgUGGAUGGca--GUUCCUGAUGUu -5'
18169	3'	-53.4	NC_004680.1	+	27899	0.69	0.635075
	Target:  5'- -aGGCugCUACgaCGUCAAGGGCa---- -3' miRNA:   3'- caCCGugGAUG--GCAGUUCCUGauguu -5'
18169	3'	-53.4	NC_004680.1	+	15879	0.7	0.545475
	Target:  5'- cGUGGCGCCUgaGCCGggUGAGGACa---- -3' miRNA:   3'- -CACCGUGGA--UGGCa-GUUCCUGauguu -5'
18169	3'	-53.4	NC_004680.1	+	5189	1.06	0.002167
	Target:  5'- gGUGGCACCUACCGUCAAGGACUACAAg -3' miRNA:   3'- -CACCGUGGAUGGCAGUUCCUGAUGUU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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