miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18169 5' -60.6 NC_004680.1 + 59171 0.66 0.470844
Target:  5'- cGCCGGUguuggguuGugCUUGGCGGcCGCa--- -3'
miRNA:   3'- -CGGCCGu-------CugGAGCCGCCuGCGcuaa -5'
18169 5' -60.6 NC_004680.1 + 35857 0.66 0.465046
Target:  5'- aUCGGuCAGAUCUgGGaagaggaaggccgauCGGACGCGAa- -3'
miRNA:   3'- cGGCC-GUCUGGAgCC---------------GCCUGCGCUaa -5'
18169 5' -60.6 NC_004680.1 + 36105 0.66 0.461202
Target:  5'- -gCGGCGaaacgcgcgcguGGCCUCGGCcGGuAUGCGGUc -3'
miRNA:   3'- cgGCCGU------------CUGGAGCCG-CC-UGCGCUAa -5'
18169 5' -60.6 NC_004680.1 + 47842 0.66 0.461202
Target:  5'- cGCCGGCuGGCUgCGGCGGuuggccggguCGCuGAg- -3'
miRNA:   3'- -CGGCCGuCUGGaGCCGCCu---------GCG-CUaa -5'
18169 5' -60.6 NC_004680.1 + 37974 0.66 0.442236
Target:  5'- cGCCGGUAcgcauCCUCGGCGGcagucAUGCcGGUg -3'
miRNA:   3'- -CGGCCGUcu---GGAGCCGCC-----UGCG-CUAa -5'
18169 5' -60.6 NC_004680.1 + 34346 0.66 0.442236
Target:  5'- uGCCGG-GGAuggugaaucCCUCGGCaGGGCGCa--- -3'
miRNA:   3'- -CGGCCgUCU---------GGAGCCG-CCUGCGcuaa -5'
18169 5' -60.6 NC_004680.1 + 48958 0.66 0.442236
Target:  5'- aUCGcCAGAgCCUUGGCGGAUGaCGAa- -3'
miRNA:   3'- cGGCcGUCU-GGAGCCGCCUGC-GCUaa -5'
18169 5' -60.6 NC_004680.1 + 25104 0.66 0.43292
Target:  5'- gGCCGGgGacgguGGCCUauacggaggUGGUGGugGCGGUg -3'
miRNA:   3'- -CGGCCgU-----CUGGA---------GCCGCCugCGCUAa -5'
18169 5' -60.6 NC_004680.1 + 41831 0.66 0.423719
Target:  5'- uCCaGCAGAUg-CGGCGGGCGgGGUc -3'
miRNA:   3'- cGGcCGUCUGgaGCCGCCUGCgCUAa -5'
18169 5' -60.6 NC_004680.1 + 33660 0.66 0.420072
Target:  5'- gGCCaGcGCAGGCCgaggaguuccccaCGGCGGGCGCc--- -3'
miRNA:   3'- -CGG-C-CGUCUGGa------------GCCGCCUGCGcuaa -5'
18169 5' -60.6 NC_004680.1 + 51445 0.67 0.388121
Target:  5'- gGCgGGgAGAcuuCCUCGGCuguGGAUGCGGc- -3'
miRNA:   3'- -CGgCCgUCU---GGAGCCG---CCUGCGCUaa -5'
18169 5' -60.6 NC_004680.1 + 12029 0.67 0.388121
Target:  5'- aCCGGCAuuCCUaUGGCuacGGGCGCGGUc -3'
miRNA:   3'- cGGCCGUcuGGA-GCCG---CCUGCGCUAa -5'
18169 5' -60.6 NC_004680.1 + 20167 0.67 0.388121
Target:  5'- cGCCGGaGGAUCaggCGGCGGugGaucuGAUUg -3'
miRNA:   3'- -CGGCCgUCUGGa--GCCGCCugCg---CUAA- -5'
18169 5' -60.6 NC_004680.1 + 11459 0.67 0.378682
Target:  5'- aGCCGGUccucuucAGucGCCUCGGUGGACuGCu--- -3'
miRNA:   3'- -CGGCCG-------UC--UGGAGCCGCCUG-CGcuaa -5'
18169 5' -60.6 NC_004680.1 + 2673 0.67 0.377831
Target:  5'- aGCCguGGCGGAUCagguccgcuaugCGGUGGugGCGGg- -3'
miRNA:   3'- -CGG--CCGUCUGGa-----------GCCGCCugCGCUaa -5'
18169 5' -60.6 NC_004680.1 + 24462 0.68 0.346477
Target:  5'- uGCUGGguGACaCUgaucgguggCGGCGGAaGCGGUg -3'
miRNA:   3'- -CGGCCguCUG-GA---------GCCGCCUgCGCUAa -5'
18169 5' -60.6 NC_004680.1 + 47784 0.68 0.338542
Target:  5'- -aCGGgAGACUcCGGCGGaACGUGAg- -3'
miRNA:   3'- cgGCCgUCUGGaGCCGCC-UGCGCUaa -5'
18169 5' -60.6 NC_004680.1 + 27838 0.68 0.338542
Target:  5'- aGCuCGGCGG-CCggacggUGGUGGACGCGc-- -3'
miRNA:   3'- -CG-GCCGUCuGGa-----GCCGCCUGCGCuaa -5'
18169 5' -60.6 NC_004680.1 + 58399 0.68 0.336187
Target:  5'- cGCCGGCAGgugaGCCagugggcuguggugUCGGCGGcuuugGCGAUg -3'
miRNA:   3'- -CGGCCGUC----UGG--------------AGCCGCCug---CGCUAa -5'
18169 5' -60.6 NC_004680.1 + 56622 0.68 0.323071
Target:  5'- -aCGGCAGGgcgagggcgaugUCUCGGCGGACaGCGc-- -3'
miRNA:   3'- cgGCCGUCU------------GGAGCCGCCUG-CGCuaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.