miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18170 3' -54.7 NC_004680.1 + 50280 0.65 0.782728
Target:  5'- aCCUcgGcuaccaauucggcgaGCAGCCGguagGACCGGCc -3'
miRNA:   3'- gGGAuaCug-------------CGUCGGUaa--CUGGCCGu -5'
18170 3' -54.7 NC_004680.1 + 18843 0.66 0.775739
Target:  5'- cCCCUG-GGCGUgguGUCGUgGAUCGGCu -3'
miRNA:   3'- -GGGAUaCUGCGu--CGGUAaCUGGCCGu -5'
18170 3' -54.7 NC_004680.1 + 43560 0.66 0.775739
Target:  5'- uCCCacGUGuaGCGguGCCAg-GACCGGUu -3'
miRNA:   3'- -GGGa-UAC--UGCguCGGUaaCUGGCCGu -5'
18170 3' -54.7 NC_004680.1 + 37668 0.66 0.775739
Target:  5'- --gUAUGACGCGGCCucuUUGAacgUGGCc -3'
miRNA:   3'- gggAUACUGCGUCGGu--AACUg--GCCGu -5'
18170 3' -54.7 NC_004680.1 + 5195 0.66 0.775739
Target:  5'- aCCUAccgucaagGACuacaaGGCCGcUGGCCGGCAg -3'
miRNA:   3'- gGGAUa-------CUGcg---UCGGUaACUGGCCGU- -5'
18170 3' -54.7 NC_004680.1 + 9996 0.66 0.76563
Target:  5'- aCCCUugagggGAC-CGGUCg--GGCCGGCAu -3'
miRNA:   3'- -GGGAua----CUGcGUCGGuaaCUGGCCGU- -5'
18170 3' -54.7 NC_004680.1 + 24891 0.66 0.755384
Target:  5'- aCUaGUGGCGguGCC----GCCGGCGg -3'
miRNA:   3'- gGGaUACUGCguCGGuaacUGGCCGU- -5'
18170 3' -54.7 NC_004680.1 + 12002 0.66 0.745011
Target:  5'- aCCCgaaUGUGuACGgAGCgAUcuucGACCGGCAu -3'
miRNA:   3'- -GGG---AUAC-UGCgUCGgUAa---CUGGCCGU- -5'
18170 3' -54.7 NC_004680.1 + 7420 0.66 0.745011
Target:  5'- uCCUUGUcgaguaugacGACGaCGGCCAcuugGugCGGCAu -3'
miRNA:   3'- -GGGAUA----------CUGC-GUCGGUaa--CugGCCGU- -5'
18170 3' -54.7 NC_004680.1 + 47928 0.66 0.745011
Target:  5'- aCCCggccaaccGcCGCAGCCA---GCCGGCGc -3'
miRNA:   3'- -GGGaua-----CuGCGUCGGUaacUGGCCGU- -5'
18170 3' -54.7 NC_004680.1 + 3649 0.66 0.745011
Target:  5'- uUCCUGggGACGCuGCaccggAUUG-CCGGCGa -3'
miRNA:   3'- -GGGAUa-CUGCGuCGg----UAACuGGCCGU- -5'
18170 3' -54.7 NC_004680.1 + 19508 0.66 0.73347
Target:  5'- aCCC-AUGugGUGGCguUgaacuuaccgggcUGACCGGCc -3'
miRNA:   3'- -GGGaUACugCGUCGguA-------------ACUGGCCGu -5'
18170 3' -54.7 NC_004680.1 + 6069 0.67 0.723935
Target:  5'- gCCCgGUGACGCGcuggaagguGUCAcUGACaCGGCc -3'
miRNA:   3'- -GGGaUACUGCGU---------CGGUaACUG-GCCGu -5'
18170 3' -54.7 NC_004680.1 + 32467 0.67 0.702492
Target:  5'- gCCgcacgaaAUGGCGCGGaCCAgUGuCCGGCu -3'
miRNA:   3'- gGGa------UACUGCGUC-GGUaACuGGCCGu -5'
18170 3' -54.7 NC_004680.1 + 11109 0.68 0.669841
Target:  5'- -----cGACGgGGCCGgggGGCCGGCu -3'
miRNA:   3'- gggauaCUGCgUCGGUaa-CUGGCCGu -5'
18170 3' -54.7 NC_004680.1 + 21650 0.68 0.61485
Target:  5'- -aCUGUGcGCGguGCCGUUG-CCGuGCGc -3'
miRNA:   3'- ggGAUAC-UGCguCGGUAACuGGC-CGU- -5'
18170 3' -54.7 NC_004680.1 + 20532 0.69 0.603858
Target:  5'- aCgCUGUuuccGACGUGGCCAUgGACgGGCGc -3'
miRNA:   3'- -GgGAUA----CUGCGUCGGUAaCUGgCCGU- -5'
18170 3' -54.7 NC_004680.1 + 47843 0.69 0.581956
Target:  5'- gCCggcUGGCuGCGGCgGUUGGCCGGg- -3'
miRNA:   3'- gGGau-ACUG-CGUCGgUAACUGGCCgu -5'
18170 3' -54.7 NC_004680.1 + 35186 0.69 0.558058
Target:  5'- -----cGACGCAGCCGagccaaccucgGGCCGGCGa -3'
miRNA:   3'- gggauaCUGCGUCGGUaa---------CUGGCCGU- -5'
18170 3' -54.7 NC_004680.1 + 17290 0.7 0.538715
Target:  5'- ---cGUGugGCGGCCGguacACCGGCGa -3'
miRNA:   3'- gggaUACugCGUCGGUaac-UGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.