Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18170 | 3' | -54.7 | NC_004680.1 | + | 7601 | 1.1 | 0.001067 |
Target: 5'- uCCCUAUGACGCAGCCAUUGACCGGCAc -3' miRNA: 3'- -GGGAUACUGCGUCGGUAACUGGCCGU- -5' |
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18170 | 3' | -54.7 | NC_004680.1 | + | 25777 | 0.74 | 0.305025 |
Target: 5'- gCCUGUGGCGCAGgCGUguuuguagaugaGGCCGGUg -3' miRNA: 3'- gGGAUACUGCGUCgGUAa-----------CUGGCCGu -5' |
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18170 | 3' | -54.7 | NC_004680.1 | + | 17084 | 0.74 | 0.314214 |
Target: 5'- uCCC---GGCGCAGCCGUUcGAUUGGCGg -3' miRNA: 3'- -GGGauaCUGCGUCGGUAA-CUGGCCGU- -5' |
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18170 | 3' | -54.7 | NC_004680.1 | + | 9313 | 0.72 | 0.398803 |
Target: 5'- cCCCgc-GAacaGCAcgcgccaccgcGCCAUUGACCGGCGc -3' miRNA: 3'- -GGGauaCUg--CGU-----------CGGUAACUGGCCGU- -5' |
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18170 | 3' | -54.7 | NC_004680.1 | + | 34470 | 0.72 | 0.436485 |
Target: 5'- aCCCgaugGUGuCGC-GUCGUgGACCGGCAc -3' miRNA: 3'- -GGGa---UACuGCGuCGGUAaCUGGCCGU- -5' |
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18170 | 3' | -54.7 | NC_004680.1 | + | 17290 | 0.7 | 0.538715 |
Target: 5'- ---cGUGugGCGGCCGguacACCGGCGa -3' miRNA: 3'- gggaUACugCGUCGGUaac-UGGCCGU- -5' |
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18170 | 3' | -54.7 | NC_004680.1 | + | 35186 | 0.69 | 0.558058 |
Target: 5'- -----cGACGCAGCCGagccaaccucgGGCCGGCGa -3' miRNA: 3'- gggauaCUGCGUCGGUaa---------CUGGCCGU- -5' |
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18170 | 3' | -54.7 | NC_004680.1 | + | 47843 | 0.69 | 0.581956 |
Target: 5'- gCCggcUGGCuGCGGCgGUUGGCCGGg- -3' miRNA: 3'- gGGau-ACUG-CGUCGgUAACUGGCCgu -5' |
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18170 | 3' | -54.7 | NC_004680.1 | + | 20532 | 0.69 | 0.603858 |
Target: 5'- aCgCUGUuuccGACGUGGCCAUgGACgGGCGc -3' miRNA: 3'- -GgGAUA----CUGCGUCGGUAaCUGgCCGU- -5' |
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18170 | 3' | -54.7 | NC_004680.1 | + | 21650 | 0.68 | 0.61485 |
Target: 5'- -aCUGUGcGCGguGCCGUUG-CCGuGCGc -3' miRNA: 3'- ggGAUAC-UGCguCGGUAACuGGC-CGU- -5' |
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18170 | 3' | -54.7 | NC_004680.1 | + | 11109 | 0.68 | 0.669841 |
Target: 5'- -----cGACGgGGCCGgggGGCCGGCu -3' miRNA: 3'- gggauaCUGCgUCGGUaa-CUGGCCGu -5' |
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18170 | 3' | -54.7 | NC_004680.1 | + | 32467 | 0.67 | 0.702492 |
Target: 5'- gCCgcacgaaAUGGCGCGGaCCAgUGuCCGGCu -3' miRNA: 3'- gGGa------UACUGCGUC-GGUaACuGGCCGu -5' |
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18170 | 3' | -54.7 | NC_004680.1 | + | 6069 | 0.67 | 0.723935 |
Target: 5'- gCCCgGUGACGCGcuggaagguGUCAcUGACaCGGCc -3' miRNA: 3'- -GGGaUACUGCGU---------CGGUaACUG-GCCGu -5' |
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18170 | 3' | -54.7 | NC_004680.1 | + | 19508 | 0.66 | 0.73347 |
Target: 5'- aCCC-AUGugGUGGCguUgaacuuaccgggcUGACCGGCc -3' miRNA: 3'- -GGGaUACugCGUCGguA-------------ACUGGCCGu -5' |
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18170 | 3' | -54.7 | NC_004680.1 | + | 47928 | 0.66 | 0.745011 |
Target: 5'- aCCCggccaaccGcCGCAGCCA---GCCGGCGc -3' miRNA: 3'- -GGGaua-----CuGCGUCGGUaacUGGCCGU- -5' |
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18170 | 3' | -54.7 | NC_004680.1 | + | 3649 | 0.66 | 0.745011 |
Target: 5'- uUCCUGggGACGCuGCaccggAUUG-CCGGCGa -3' miRNA: 3'- -GGGAUa-CUGCGuCGg----UAACuGGCCGU- -5' |
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18170 | 3' | -54.7 | NC_004680.1 | + | 7420 | 0.66 | 0.745011 |
Target: 5'- uCCUUGUcgaguaugacGACGaCGGCCAcuugGugCGGCAu -3' miRNA: 3'- -GGGAUA----------CUGC-GUCGGUaa--CugGCCGU- -5' |
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18170 | 3' | -54.7 | NC_004680.1 | + | 12002 | 0.66 | 0.745011 |
Target: 5'- aCCCgaaUGUGuACGgAGCgAUcuucGACCGGCAu -3' miRNA: 3'- -GGG---AUAC-UGCgUCGgUAa---CUGGCCGU- -5' |
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18170 | 3' | -54.7 | NC_004680.1 | + | 24891 | 0.66 | 0.755384 |
Target: 5'- aCUaGUGGCGguGCC----GCCGGCGg -3' miRNA: 3'- gGGaUACUGCguCGGuaacUGGCCGU- -5' |
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18170 | 3' | -54.7 | NC_004680.1 | + | 9996 | 0.66 | 0.76563 |
Target: 5'- aCCCUugagggGAC-CGGUCg--GGCCGGCAu -3' miRNA: 3'- -GGGAua----CUGcGUCGGuaaCUGGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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