miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18170 5' -53.9 NC_004680.1 + 21560 0.66 0.802199
Target:  5'- cGgGCCGGUGGccUCAuCUGGCGagCAa -3'
miRNA:   3'- uCgCGGCCGCCuaAGU-GACUGUaaGU- -5'
18170 5' -53.9 NC_004680.1 + 7070 0.66 0.792417
Target:  5'- uGCGCCuGCGGAUcagUCGCgccGACcUUCc -3'
miRNA:   3'- uCGCGGcCGCCUA---AGUGa--CUGuAAGu -5'
18170 5' -53.9 NC_004680.1 + 28715 0.66 0.782464
Target:  5'- cGCGCCaccacGGCGGGguUUCACgcaUGcCGUUCGa -3'
miRNA:   3'- uCGCGG-----CCGCCU--AAGUG---ACuGUAAGU- -5'
18170 5' -53.9 NC_004680.1 + 56895 0.66 0.762092
Target:  5'- cGGUGCCGGUGgGGUUCagGCUGAgGg--- -3'
miRNA:   3'- -UCGCGGCCGC-CUAAG--UGACUgUaagu -5'
18170 5' -53.9 NC_004680.1 + 241 0.67 0.741175
Target:  5'- uGCGCUGGUGGAa----UGACAUUUg -3'
miRNA:   3'- uCGCGGCCGCCUaagugACUGUAAGu -5'
18170 5' -53.9 NC_004680.1 + 24038 0.67 0.741175
Target:  5'- gGGUGCCGGuCGauGGUUCGgUGACG-UCGg -3'
miRNA:   3'- -UCGCGGCC-GC--CUAAGUgACUGUaAGU- -5'
18170 5' -53.9 NC_004680.1 + 6060 0.68 0.698087
Target:  5'- cGCGCUGGaaGGUgUCACUGACAc--- -3'
miRNA:   3'- uCGCGGCCgcCUA-AGUGACUGUaagu -5'
18170 5' -53.9 NC_004680.1 + 11253 0.7 0.576298
Target:  5'- uGcCGCCGG-GGAUUC-CUGGCAUgccgCAg -3'
miRNA:   3'- uC-GCGGCCgCCUAAGuGACUGUAa---GU- -5'
18170 5' -53.9 NC_004680.1 + 16296 0.7 0.56532
Target:  5'- gGGCGUgacguuuuucgCGGCGGAUugaugUCGCUGGUGUUCAu -3'
miRNA:   3'- -UCGCG-----------GCCGCCUA-----AGUGACUGUAAGU- -5'
18170 5' -53.9 NC_004680.1 + 29147 0.71 0.511412
Target:  5'- cGGCGCCGcCGGA--CACUGACAg--- -3'
miRNA:   3'- -UCGCGGCcGCCUaaGUGACUGUaagu -5'
18170 5' -53.9 NC_004680.1 + 16953 0.71 0.4801
Target:  5'- aGGUGCCGGUGGugacucgacCGCUGACggGUUCGu -3'
miRNA:   3'- -UCGCGGCCGCCuaa------GUGACUG--UAAGU- -5'
18170 5' -53.9 NC_004680.1 + 7635 1.09 0.001498
Target:  5'- gAGCGCCGGCGGAUUCACUGACAUUCAc -3'
miRNA:   3'- -UCGCGGCCGCCUAAGUGACUGUAAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.