miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18173 5' -58.7 NC_004680.1 + 12324 0.66 0.556036
Target:  5'- gGCGACCgCcgcuucgGGUGCCGcGCCggggagUCCCgCGUCu -3'
miRNA:   3'- -CGCUGG-Ga------CUAUGGC-CGG------AGGG-GUAG- -5'
18173 5' -58.7 NC_004680.1 + 14855 0.66 0.545588
Target:  5'- uCGGCCCUccaguCCGGCgaCCCCAa- -3'
miRNA:   3'- cGCUGGGAcuau-GGCCGgaGGGGUag -5'
18173 5' -58.7 NC_004680.1 + 55054 0.66 0.524891
Target:  5'- cCGACCCgccaccgAUCGuGCCggCCCCGUCc -3'
miRNA:   3'- cGCUGGGacua---UGGC-CGGa-GGGGUAG- -5'
18173 5' -58.7 NC_004680.1 + 18590 0.66 0.524891
Target:  5'- gGUGGgCCUGGUA--GGCCUUCCCGg- -3'
miRNA:   3'- -CGCUgGGACUAUggCCGGAGGGGUag -5'
18173 5' -58.7 NC_004680.1 + 22100 0.67 0.504499
Target:  5'- aCGACgCCUuacugugGCUGGCCgcCCCCAUCc -3'
miRNA:   3'- cGCUG-GGAcua----UGGCCGGa-GGGGUAG- -5'
18173 5' -58.7 NC_004680.1 + 11467 0.67 0.504499
Target:  5'- -gGGCCUUGA-GCCGGuCCUCUUCAgUCg -3'
miRNA:   3'- cgCUGGGACUaUGGCC-GGAGGGGU-AG- -5'
18173 5' -58.7 NC_004680.1 + 55196 0.67 0.484457
Target:  5'- cUGACCU--GUACCGGCCaccgUCCCUAcUCa -3'
miRNA:   3'- cGCUGGGacUAUGGCCGG----AGGGGU-AG- -5'
18173 5' -58.7 NC_004680.1 + 48591 0.67 0.47458
Target:  5'- aUGACCCgaccgGGcAgCGGCUUCCCCGg- -3'
miRNA:   3'- cGCUGGGa----CUaUgGCCGGAGGGGUag -5'
18173 5' -58.7 NC_004680.1 + 37233 0.68 0.445574
Target:  5'- uGCGACCCguacaccuuguUGGuUACCGGCCacacaaaCUCGUCg -3'
miRNA:   3'- -CGCUGGG-----------ACU-AUGGCCGGag-----GGGUAG- -5'
18173 5' -58.7 NC_004680.1 + 26098 0.68 0.436127
Target:  5'- cGCGGCCCc---GCCGGCUggaacgCCaCCGUCc -3'
miRNA:   3'- -CGCUGGGacuaUGGCCGGa-----GG-GGUAG- -5'
18173 5' -58.7 NC_004680.1 + 40999 0.69 0.364962
Target:  5'- uGCGGuCUCUGGccUACCucGGCCUgCCCGUUg -3'
miRNA:   3'- -CGCU-GGGACU--AUGG--CCGGAgGGGUAG- -5'
18173 5' -58.7 NC_004680.1 + 30690 0.72 0.24198
Target:  5'- uGCGACUgUGAgGCCGGCCgaUCCUGUCc -3'
miRNA:   3'- -CGCUGGgACUaUGGCCGGa-GGGGUAG- -5'
18173 5' -58.7 NC_004680.1 + 11084 0.73 0.230027
Target:  5'- gGCGGCCUUGGUGgCGGCCccggCgCCCAa- -3'
miRNA:   3'- -CGCUGGGACUAUgGCCGGa---G-GGGUag -5'
18173 5' -58.7 NC_004680.1 + 10093 0.73 0.207083
Target:  5'- aGCGACgUcGAUGCCGGCCcgaccggUCCCC-UCa -3'
miRNA:   3'- -CGCUGgGaCUAUGGCCGG-------AGGGGuAG- -5'
18173 5' -58.7 NC_004680.1 + 10997 1.12 0.000336
Target:  5'- aGCGACCCUGAUACCGGCCUCCCCAUCg -3'
miRNA:   3'- -CGCUGGGACUAUGGCCGGAGGGGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.