Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18174 | 3' | -56 | NC_004680.1 | + | 23559 | 0.66 | 0.726394 |
Target: 5'- cGCGGUgCUUCcGGGUgacggguauucgUGCCUGGUGccGAGg -3' miRNA: 3'- -CGCCA-GGAGuUCCA------------GCGGACUAC--CUC- -5' |
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18174 | 3' | -56 | NC_004680.1 | + | 41001 | 0.67 | 0.662297 |
Target: 5'- uCGGgggCCUCGGGGgucgaGCCUGGUGa-- -3' miRNA: 3'- cGCCa--GGAGUUCCag---CGGACUACcuc -5' |
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18174 | 3' | -56 | NC_004680.1 | + | 10993 | 0.68 | 0.59611 |
Target: 5'- gGCGGUCCUCGccGUCGggcugguCCUGAaucGGAa -3' miRNA: 3'- -CGCCAGGAGUucCAGC-------GGACUa--CCUc -5' |
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18174 | 3' | -56 | NC_004680.1 | + | 14957 | 0.73 | 0.305089 |
Target: 5'- cGCGGUUCgugcgauccugUUggGGUCGCCgGAcUGGAGg -3' miRNA: 3'- -CGCCAGG-----------AGuuCCAGCGGaCU-ACCUC- -5' |
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18174 | 3' | -56 | NC_004680.1 | + | 11457 | 0.75 | 0.231265 |
Target: 5'- cCGGUCCUCuucaGUCGCCUcGGUGGAc -3' miRNA: 3'- cGCCAGGAGuuc-CAGCGGA-CUACCUc -5' |
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18174 | 3' | -56 | NC_004680.1 | + | 12052 | 1.12 | 0.000636 |
Target: 5'- cGCGGUCCUCAAGGUCGCCUGAUGGAGg -3' miRNA: 3'- -CGCCAGGAGUUCCAGCGGACUACCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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