miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18175 5' -55.8 NC_004680.1 + 30932 0.66 0.733294
Target:  5'- uUGUggCGUCGGUGuGGCUGGCGGucguCGCg -3'
miRNA:   3'- gACAa-GUGGCCAC-CCGGCUGCUu---GUG- -5'
18175 5' -55.8 NC_004680.1 + 28235 0.66 0.722821
Target:  5'- gUGUUCcCUGGUGGaucggccCCGACGccGACACc -3'
miRNA:   3'- gACAAGuGGCCACCc------GGCUGC--UUGUG- -5'
18175 5' -55.8 NC_004680.1 + 21320 0.66 0.690918
Target:  5'- gUGUUCG-CGGUGGuGgCGugGGAcCGCg -3'
miRNA:   3'- gACAAGUgGCCACC-CgGCugCUU-GUG- -5'
18175 5' -55.8 NC_004680.1 + 7696 0.66 0.690918
Target:  5'- gUGUUCAuCCGcgacaaccGUGGuGCCGcgACGGACAUg -3'
miRNA:   3'- gACAAGU-GGC--------CACC-CGGC--UGCUUGUG- -5'
18175 5' -55.8 NC_004680.1 + 6639 0.66 0.690918
Target:  5'- -gGUUCGCCGGUGaaGGUgaaagaccgUGugGggUACg -3'
miRNA:   3'- gaCAAGUGGCCAC--CCG---------GCugCuuGUG- -5'
18175 5' -55.8 NC_004680.1 + 8395 0.67 0.680158
Target:  5'- -cGUUCccGCCGGgucGGGCCGcAUGAAgUACu -3'
miRNA:   3'- gaCAAG--UGGCCa--CCCGGC-UGCUU-GUG- -5'
18175 5' -55.8 NC_004680.1 + 3647 0.67 0.680158
Target:  5'- cCUGgggacgcugCACCGGauuGCCGGCGAACAg -3'
miRNA:   3'- -GACaa-------GUGGCCaccCGGCUGCUUGUg -5'
18175 5' -55.8 NC_004680.1 + 33838 0.67 0.658515
Target:  5'- uUGUUCACCc---GGCCGAagaCGGACGCu -3'
miRNA:   3'- gACAAGUGGccacCCGGCU---GCUUGUG- -5'
18175 5' -55.8 NC_004680.1 + 30871 0.67 0.647653
Target:  5'- ---gUCGCCGGUGauccgcuccaaGCCGGCGAcCACa -3'
miRNA:   3'- gacaAGUGGCCACc----------CGGCUGCUuGUG- -5'
18175 5' -55.8 NC_004680.1 + 59175 0.67 0.636777
Target:  5'- -aGUUCGCCGGUguuGGGUugugcuUGGCGGcCGCa -3'
miRNA:   3'- gaCAAGUGGCCA---CCCG------GCUGCUuGUG- -5'
18175 5' -55.8 NC_004680.1 + 6013 0.67 0.625897
Target:  5'- gUGUUCACCaccgGGGCCacucggguGCGGGCGCa -3'
miRNA:   3'- gACAAGUGGcca-CCCGGc-------UGCUUGUG- -5'
18175 5' -55.8 NC_004680.1 + 3793 0.68 0.604162
Target:  5'- ---gUCACCGGUGcaGGCCGuCGAGguCu -3'
miRNA:   3'- gacaAGUGGCCAC--CCGGCuGCUUguG- -5'
18175 5' -55.8 NC_004680.1 + 11293 0.68 0.597656
Target:  5'- ----aCACCGGUgcauccggcaacuucGGGCCaGACGAugACc -3'
miRNA:   3'- gacaaGUGGCCA---------------CCCGG-CUGCUugUG- -5'
18175 5' -55.8 NC_004680.1 + 26765 0.68 0.592242
Target:  5'- cCUGUUCGCgGGUgcguagcGGGCCuucggGGCGGAacCACg -3'
miRNA:   3'- -GACAAGUGgCCA-------CCCGG-----CUGCUU--GUG- -5'
18175 5' -55.8 NC_004680.1 + 1344 0.69 0.507402
Target:  5'- uUGUUCuucuuccGCCGuUGGGCUGGCGAugaGCAUg -3'
miRNA:   3'- gACAAG-------UGGCcACCCGGCUGCU---UGUG- -5'
18175 5' -55.8 NC_004680.1 + 26178 0.71 0.438617
Target:  5'- -cGUUCcaGCCGGcgGGGCCG-CGGgacuGCACa -3'
miRNA:   3'- gaCAAG--UGGCCa-CCCGGCuGCU----UGUG- -5'
18175 5' -55.8 NC_004680.1 + 21832 0.72 0.37461
Target:  5'- gCUGUUgGCUGGUGGGCUGAguccCACg -3'
miRNA:   3'- -GACAAgUGGCCACCCGGCUgcuuGUG- -5'
18175 5' -55.8 NC_004680.1 + 44527 0.73 0.306582
Target:  5'- -cGUUCGCCgGGUGGaaagaaguccgacCCGACGAACGCc -3'
miRNA:   3'- gaCAAGUGG-CCACCc------------GGCUGCUUGUG- -5'
18175 5' -55.8 NC_004680.1 + 12492 1.1 0.000837
Target:  5'- cCUGUUCACCGGUGGGCCGACGAACACa -3'
miRNA:   3'- -GACAAGUGGCCACCCGGCUGCUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.