miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18177 3' -56.6 NC_004680.1 + 39386 0.66 0.683884
Target:  5'- gACCaUCUGCAcca-GGGCGGCCagUGGg -3'
miRNA:   3'- gUGGaAGGUGUacuaCCCGCCGG--ACC- -5'
18177 3' -56.6 NC_004680.1 + 46105 0.66 0.683884
Target:  5'- ---aUUCgGCgGUGAcgGGGCGGCCUuGGg -3'
miRNA:   3'- guggAAGgUG-UACUa-CCCGCCGGA-CC- -5'
18177 3' -56.6 NC_004680.1 + 47469 0.66 0.657964
Target:  5'- cCGCCggcgaagcgaaggUCC-UcgGAUGGGCuGGCCUcGGa -3'
miRNA:   3'- -GUGGa------------AGGuGuaCUACCCG-CCGGA-CC- -5'
18177 3' -56.6 NC_004680.1 + 12440 0.66 0.651457
Target:  5'- uGCCcaCCACcgGUGGUGgcGGCGGCCcgaUGGc -3'
miRNA:   3'- gUGGaaGGUG--UACUAC--CCGCCGG---ACC- -5'
18177 3' -56.6 NC_004680.1 + 59214 0.66 0.651457
Target:  5'- gCGCCg-CCGCGUGAUcGGGguuguaugugguCGGCgUGGa -3'
miRNA:   3'- -GUGGaaGGUGUACUA-CCC------------GCCGgACC- -5'
18177 3' -56.6 NC_004680.1 + 23533 0.67 0.618873
Target:  5'- cCACCagUCACGc---GGGCGGCCUGc -3'
miRNA:   3'- -GUGGaaGGUGUacuaCCCGCCGGACc -5'
18177 3' -56.6 NC_004680.1 + 25251 0.68 0.561699
Target:  5'- gCACCUuuUCCGCugcgccacgacaagGUGGUGguGGCguuGGCCUGGc -3'
miRNA:   3'- -GUGGA--AGGUG--------------UACUAC--CCG---CCGGACC- -5'
18177 3' -56.6 NC_004680.1 + 31468 0.68 0.512244
Target:  5'- aCGCUUUCCACAUGAaacgaUGGGaagaaGCCaaUGGg -3'
miRNA:   3'- -GUGGAAGGUGUACU-----ACCCgc---CGG--ACC- -5'
18177 3' -56.6 NC_004680.1 + 12523 0.69 0.461719
Target:  5'- cCGCCgccaCCACcgGUGGUGGGCagcgGGgCUGGg -3'
miRNA:   3'- -GUGGaa--GGUG--UACUACCCG----CCgGACC- -5'
18177 3' -56.6 NC_004680.1 + 43535 0.7 0.423257
Target:  5'- aCGCCg-CCACGUucGAccaGGGCGGCCgGGa -3'
miRNA:   3'- -GUGGaaGGUGUA--CUa--CCCGCCGGaCC- -5'
18177 3' -56.6 NC_004680.1 + 8356 0.7 0.413944
Target:  5'- --aCUUCUAUGUgugGAUGGGUGGCCcGGg -3'
miRNA:   3'- gugGAAGGUGUA---CUACCCGCCGGaCC- -5'
18177 3' -56.6 NC_004680.1 + 13129 1.09 0.000829
Target:  5'- uCACCUUCCACAUGAUGGGCGGCCUGGc -3'
miRNA:   3'- -GUGGAAGGUGUACUACCCGCCGGACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.