miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18181 3' -61.1 NC_004680.1 + 41056 0.66 0.483359
Target:  5'- gGGugcGGCUGGAUgagcuugugccgCUGGACGACaaGGCAa -3'
miRNA:   3'- gCC---UCGACCUG------------GGCCUGCUGggCUGU- -5'
18181 3' -61.1 NC_004680.1 + 29314 0.66 0.483359
Target:  5'- uCGaGGGCaacguaaGGGCCgGGaACGuGCCCGACAg -3'
miRNA:   3'- -GC-CUCGa------CCUGGgCC-UGC-UGGGCUGU- -5'
18181 3' -61.1 NC_004680.1 + 35036 0.66 0.483359
Target:  5'- gCGGcGUUGacguGCCCGGACGcuCCUGGCGa -3'
miRNA:   3'- -GCCuCGACc---UGGGCCUGCu-GGGCUGU- -5'
18181 3' -61.1 NC_004680.1 + 12623 0.66 0.473739
Target:  5'- uGGcGCUGGACgCGauGGC-ACCCGGCGc -3'
miRNA:   3'- gCCuCGACCUGgGC--CUGcUGGGCUGU- -5'
18181 3' -61.1 NC_004680.1 + 4480 0.66 0.464216
Target:  5'- aCGGAGCcagUGGAaCCGGcaguCGACCagGACGc -3'
miRNA:   3'- -GCCUCG---ACCUgGGCCu---GCUGGg-CUGU- -5'
18181 3' -61.1 NC_004680.1 + 27745 0.66 0.464216
Target:  5'- aGGugaAGC-GGuuCCCGGACGACUgGACc -3'
miRNA:   3'- gCC---UCGaCCu-GGGCCUGCUGGgCUGu -5'
18181 3' -61.1 NC_004680.1 + 21421 0.66 0.445475
Target:  5'- aCGGGGCUGaGCCCGcGCGGuCCC-ACGc -3'
miRNA:   3'- -GCCUCGACcUGGGCcUGCU-GGGcUGU- -5'
18181 3' -61.1 NC_004680.1 + 47830 0.66 0.436265
Target:  5'- gCGGAGUUGGAgCgCCGGcUGGCUgCGGCGg -3'
miRNA:   3'- -GCCUCGACCU-G-GGCCuGCUGG-GCUGU- -5'
18181 3' -61.1 NC_004680.1 + 8446 0.67 0.427166
Target:  5'- uGGGGCUGGcACCC-----ACCCGGCAg -3'
miRNA:   3'- gCCUCGACC-UGGGccugcUGGGCUGU- -5'
18181 3' -61.1 NC_004680.1 + 21264 0.67 0.427166
Target:  5'- cCGGGGCUGGugUCGGuaGCGcCaCUGugAa -3'
miRNA:   3'- -GCCUCGACCugGGCC--UGCuG-GGCugU- -5'
18181 3' -61.1 NC_004680.1 + 30794 0.67 0.41818
Target:  5'- uGGAGC-GGAUcaCCGG-CGACCgGAUg -3'
miRNA:   3'- gCCUCGaCCUG--GGCCuGCUGGgCUGu -5'
18181 3' -61.1 NC_004680.1 + 15130 0.67 0.41818
Target:  5'- aGaGGGCUGuuCCCuuugaGGACGAUCCGGCc -3'
miRNA:   3'- gC-CUCGACcuGGG-----CCUGCUGGGCUGu -5'
18181 3' -61.1 NC_004680.1 + 23728 0.68 0.366769
Target:  5'- aGGGGCgcaugaGGGgCUGGACGAUaaggCCGACGu -3'
miRNA:   3'- gCCUCGa-----CCUgGGCCUGCUG----GGCUGU- -5'
18181 3' -61.1 NC_004680.1 + 845 0.69 0.291198
Target:  5'- uGGAGCUGcACCCGGA-GGCgCCGGu- -3'
miRNA:   3'- gCCUCGACcUGGGCCUgCUG-GGCUgu -5'
18181 3' -61.1 NC_004680.1 + 23239 0.71 0.228375
Target:  5'- cCGGuGUUGGugCCcGugGAgCCCGACGu -3'
miRNA:   3'- -GCCuCGACCugGGcCugCU-GGGCUGU- -5'
18181 3' -61.1 NC_004680.1 + 25858 0.73 0.172902
Target:  5'- aCGGAGCccUGGugaucCCCGGAgCGAgcuCCCGGCAg -3'
miRNA:   3'- -GCCUCG--ACCu----GGGCCU-GCU---GGGCUGU- -5'
18181 3' -61.1 NC_004680.1 + 11107 0.73 0.172902
Target:  5'- aCGGGGCcggGGGgCCGGcUGGCCCGAUg -3'
miRNA:   3'- -GCCUCGa--CCUgGGCCuGCUGGGCUGu -5'
18181 3' -61.1 NC_004680.1 + 16946 0.73 0.168504
Target:  5'- gCGGGGCaGGugCCGGugGugACUCGACc -3'
miRNA:   3'- -GCCUCGaCCugGGCCugC--UGGGCUGu -5'
18181 3' -61.1 NC_004680.1 + 12462 0.77 0.089246
Target:  5'- cCGGAGCcGGACCCGgcaGugGACCCG-CGc -3'
miRNA:   3'- -GCCUCGaCCUGGGC---CugCUGGGCuGU- -5'
18181 3' -61.1 NC_004680.1 + 16772 1.08 0.000429
Target:  5'- aCGGAGCUGGACCCGGACGACCCGACAc -3'
miRNA:   3'- -GCCUCGACCUGGGCCUGCUGGGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.