miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18182 3' -52.8 NC_004680.1 + 51705 0.66 0.891022
Target:  5'- -cACGuUGCCGUCGuuccagcgcggcUCGCCCUgGAUCa -3'
miRNA:   3'- gcUGUuGCGGUAGU------------AGUGGGAgCUGG- -5'
18182 3' -52.8 NC_004680.1 + 28717 0.66 0.891022
Target:  5'- -cGCAACGCCAuauggcagaUCGUgCGCgaCCUgGACCu -3'
miRNA:   3'- gcUGUUGCGGU---------AGUA-GUG--GGAgCUGG- -5'
18182 3' -52.8 NC_004680.1 + 55778 0.66 0.891022
Target:  5'- gCGGCGcuCGCCAaagcCGcCACCCUCGcgaugGCCg -3'
miRNA:   3'- -GCUGUu-GCGGUa---GUaGUGGGAGC-----UGG- -5'
18182 3' -52.8 NC_004680.1 + 13371 0.66 0.890298
Target:  5'- uCGAuCGACGCCAagcaggaaUCAacccugaacuuccUCACCCaCGACa -3'
miRNA:   3'- -GCU-GUUGCGGU--------AGU-------------AGUGGGaGCUGg -5'
18182 3' -52.8 NC_004680.1 + 2832 0.66 0.883664
Target:  5'- gGGCGAacuucUGCCAccCGUCACCC--GACCa -3'
miRNA:   3'- gCUGUU-----GCGGUa-GUAGUGGGagCUGG- -5'
18182 3' -52.8 NC_004680.1 + 10098 0.66 0.883664
Target:  5'- aCGGCAGCGaCGUCGaugcCGgCC-CGACCg -3'
miRNA:   3'- -GCUGUUGCgGUAGUa---GUgGGaGCUGG- -5'
18182 3' -52.8 NC_004680.1 + 40781 0.66 0.883664
Target:  5'- uCGACAugacCGCCGUUGcucUCACCgaccCGGCCa -3'
miRNA:   3'- -GCUGUu---GCGGUAGU---AGUGGga--GCUGG- -5'
18182 3' -52.8 NC_004680.1 + 45860 0.66 0.882915
Target:  5'- gGACGugGCCccacuacAUCGUCACCggUGgaACCg -3'
miRNA:   3'- gCUGUugCGG-------UAGUAGUGGgaGC--UGG- -5'
18182 3' -52.8 NC_004680.1 + 25605 0.66 0.87605
Target:  5'- -cGCAAcCGCag-CAcUCGCCCUCGGCa -3'
miRNA:   3'- gcUGUU-GCGguaGU-AGUGGGAGCUGg -5'
18182 3' -52.8 NC_004680.1 + 43531 0.66 0.87605
Target:  5'- -uGCGACGCCGc---CACgUUCGACCa -3'
miRNA:   3'- gcUGUUGCGGUaguaGUGgGAGCUGG- -5'
18182 3' -52.8 NC_004680.1 + 49598 0.66 0.868183
Target:  5'- aCGAUAggaAUGCCGaguUCGUCGCCCaagcgcgcacucUCGugCc -3'
miRNA:   3'- -GCUGU---UGCGGU---AGUAGUGGG------------AGCugG- -5'
18182 3' -52.8 NC_004680.1 + 7835 0.66 0.860071
Target:  5'- aCGGCGACcacuucaCCGUCAcgcaaUCAUCCUCGAa- -3'
miRNA:   3'- -GCUGUUGc------GGUAGU-----AGUGGGAGCUgg -5'
18182 3' -52.8 NC_004680.1 + 32052 0.66 0.860071
Target:  5'- cCGugAAUGCC----UCACCCgCGAUCg -3'
miRNA:   3'- -GCugUUGCGGuaguAGUGGGaGCUGG- -5'
18182 3' -52.8 NC_004680.1 + 5573 0.66 0.860071
Target:  5'- gGACGuuCGCCuUCGUCAgcUCCUUGAgCg -3'
miRNA:   3'- gCUGUu-GCGGuAGUAGU--GGGAGCUgG- -5'
18182 3' -52.8 NC_004680.1 + 27419 0.67 0.851721
Target:  5'- gGGCAACGCCAacagCAUCAgCaUCaACCu -3'
miRNA:   3'- gCUGUUGCGGUa---GUAGUgGgAGcUGG- -5'
18182 3' -52.8 NC_004680.1 + 41309 0.67 0.851721
Target:  5'- gGACGAUGCCGcugcUgAUCGCCgccggcaucaUCGGCCc -3'
miRNA:   3'- gCUGUUGCGGU----AgUAGUGGg---------AGCUGG- -5'
18182 3' -52.8 NC_004680.1 + 2188 0.67 0.851721
Target:  5'- aCGACAAcaucccCGCCAUCGcagCAUCaaacuugUCGGCCa -3'
miRNA:   3'- -GCUGUU------GCGGUAGUa--GUGGg------AGCUGG- -5'
18182 3' -52.8 NC_004680.1 + 44554 0.67 0.84314
Target:  5'- cCGACgAACGCCGcaugaUCGaCGCCCUgGugUc -3'
miRNA:   3'- -GCUG-UUGCGGU-----AGUaGUGGGAgCugG- -5'
18182 3' -52.8 NC_004680.1 + 332 0.67 0.84314
Target:  5'- uCGGCGACGCCcaaauGUCAUucCACCagCGcACCg -3'
miRNA:   3'- -GCUGUUGCGG-----UAGUA--GUGGgaGC-UGG- -5'
18182 3' -52.8 NC_004680.1 + 33560 0.67 0.834338
Target:  5'- uGACGGgcgccCGCCGUgGggaACuCCUCGGCCu -3'
miRNA:   3'- gCUGUU-----GCGGUAgUag-UG-GGAGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.