miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18182 5' -67 NC_004680.1 + 22074 0.66 0.241613
Target:  5'- cGUGGUCCGG----CGGCGUucgaGCCGGUg -3'
miRNA:   3'- -CACCGGGCCcacuGCCGCGg---CGGCCA- -5'
18182 5' -67 NC_004680.1 + 12416 0.66 0.236452
Target:  5'- cGUGGgcgccuaacccagcCCCGcugcccaccaccgguGGUGGCGGCggcccgaugGCUGCCGGUg -3'
miRNA:   3'- -CACC--------------GGGC---------------CCACUGCCG---------CGGCGGCCA- -5'
18182 5' -67 NC_004680.1 + 18405 0.66 0.232502
Target:  5'- uUGGCCCGGGUGcaguugacgauugacACGGUGguguCCGCUa-- -3'
miRNA:   3'- cACCGGGCCCAC---------------UGCCGC----GGCGGcca -5'
18182 5' -67 NC_004680.1 + 25114 0.66 0.21938
Target:  5'- gGUGGCCUauacggaggugGuGGUGGCGGUGCCagGCCa-- -3'
miRNA:   3'- -CACCGGG-----------C-CCACUGCCGCGG--CGGcca -5'
18182 5' -67 NC_004680.1 + 12589 0.67 0.203872
Target:  5'- gGUGcGCUCGGaaUGGCGGUGCagGCCGGc -3'
miRNA:   3'- -CAC-CGGGCCc-ACUGCCGCGg-CGGCCa -5'
18182 5' -67 NC_004680.1 + 27956 0.67 0.203872
Target:  5'- uUGGgCCGGGUGAUucguccgaGGagauCCGCCGGa -3'
miRNA:   3'- cACCgGGCCCACUG--------CCgc--GGCGGCCa -5'
18182 5' -67 NC_004680.1 + 17068 0.67 0.198918
Target:  5'- cUGGCCCaGGUGucgauccCGGCGCaGCCGu- -3'
miRNA:   3'- cACCGGGcCCACu------GCCGCGgCGGCca -5'
18182 5' -67 NC_004680.1 + 41035 0.67 0.195512
Target:  5'- -aGGCCCgguuccuucagguugGGGUG-CGGCuggaugagcuuguGCCGCUGGa -3'
miRNA:   3'- caCCGGG---------------CCCACuGCCG-------------CGGCGGCCa -5'
18182 5' -67 NC_004680.1 + 20531 0.67 0.180138
Target:  5'- uGUGGCCCaucGUGaucGCGGUGCCGuUCGGg -3'
miRNA:   3'- -CACCGGGcc-CAC---UGCCGCGGC-GGCCa -5'
18182 5' -67 NC_004680.1 + 46460 0.68 0.175695
Target:  5'- -aGGCCCGGGgucACGGUGuuaccagcaCCGcCCGGg -3'
miRNA:   3'- caCCGGGCCCac-UGCCGC---------GGC-GGCCa -5'
18182 5' -67 NC_004680.1 + 8719 0.68 0.170921
Target:  5'- -aGGUUCGGGUGAggggggaucgucaUGGUGCUGCCGu- -3'
miRNA:   3'- caCCGGGCCCACU-------------GCCGCGGCGGCca -5'
18182 5' -67 NC_004680.1 + 40099 0.68 0.154917
Target:  5'- cUGGCgUggGGGUGACGGC-CCGCUGcGUc -3'
miRNA:   3'- cACCGgG--CCCACUGCCGcGGCGGC-CA- -5'
18182 5' -67 NC_004680.1 + 55872 0.69 0.147247
Target:  5'- -cGGCCaucgcgaGGGUGGCGGCuuuggcgagcGCCGCUuGGa -3'
miRNA:   3'- caCCGGg------CCCACUGCCG----------CGGCGG-CCa -5'
18182 5' -67 NC_004680.1 + 25051 0.7 0.119918
Target:  5'- -aGGUCCcGGUGGCGGUGggGCCGGUc -3'
miRNA:   3'- caCCGGGcCCACUGCCGCggCGGCCA- -5'
18182 5' -67 NC_004680.1 + 866 0.71 0.099953
Target:  5'- -cGGUUCGGuGUGACGGguuugaCGCUGCCGGc -3'
miRNA:   3'- caCCGGGCC-CACUGCC------GCGGCGGCCa -5'
18182 5' -67 NC_004680.1 + 8373 0.71 0.092151
Target:  5'- gGUGGCCCGGGcugggcugagcagUacucgGACGGCaGCUaGCCGGUg -3'
miRNA:   3'- -CACCGGGCCC-------------A-----CUGCCG-CGG-CGGCCA- -5'
18182 5' -67 NC_004680.1 + 24869 0.72 0.076201
Target:  5'- -gGGCgcccCCGGaguggauaacacuaGUGGCGGUGCCGCCGGc -3'
miRNA:   3'- caCCG----GGCC--------------CACUGCCGCGGCGGCCa -5'
18182 5' -67 NC_004680.1 + 11890 0.74 0.057295
Target:  5'- --uGCCCGGGgguugcaGACGGCGCC-CCGGg -3'
miRNA:   3'- cacCGGGCCCa------CUGCCGCGGcGGCCa -5'
18182 5' -67 NC_004680.1 + 25918 0.74 0.052867
Target:  5'- cGUGGUcucgCCGuGGUGGCGGcCGCCGCCGc- -3'
miRNA:   3'- -CACCG----GGC-CCACUGCC-GCGGCGGCca -5'
18182 5' -67 NC_004680.1 + 21363 0.75 0.048772
Target:  5'- -cGGCCaCGuaUGGCGGCGCCGgCGGUg -3'
miRNA:   3'- caCCGG-GCccACUGCCGCGGCgGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.