miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18184 3' -55 NC_004680.1 + 43511 0.65 0.790464
Target:  5'- gCGGCA-GGugGGacaccGGUUGCGACGc -3'
miRNA:   3'- -GCCGUaCCugCCgcua-CCAGUGUUGC- -5'
18184 3' -55 NC_004680.1 + 31989 0.65 0.790464
Target:  5'- uCGGgucCAUGaGAaccCGGuCGAUGGUCGCcACGa -3'
miRNA:   3'- -GCC---GUAC-CU---GCC-GCUACCAGUGuUGC- -5'
18184 3' -55 NC_004680.1 + 2902 0.65 0.790464
Target:  5'- uGGCAUGGGCGa-GGUGGagccUCACAuugACa -3'
miRNA:   3'- gCCGUACCUGCcgCUACC----AGUGU---UGc -5'
18184 3' -55 NC_004680.1 + 58083 0.66 0.780685
Target:  5'- uGGUGUGGGCGaCGAugccgaugguguUGGUCACu-CGa -3'
miRNA:   3'- gCCGUACCUGCcGCU------------ACCAGUGuuGC- -5'
18184 3' -55 NC_004680.1 + 2937 0.66 0.780685
Target:  5'- cCGGC---GGCGGCGAaccGGUCACuACa -3'
miRNA:   3'- -GCCGuacCUGCCGCUa--CCAGUGuUGc -5'
18184 3' -55 NC_004680.1 + 28339 0.66 0.770756
Target:  5'- aCGGCGcGGGCGGUGucgGcGUCGgGGCc -3'
miRNA:   3'- -GCCGUaCCUGCCGCua-C-CAGUgUUGc -5'
18184 3' -55 NC_004680.1 + 36212 0.66 0.770756
Target:  5'- cCGGCGUcGaAUGGCGAcUGGUCAC--CGg -3'
miRNA:   3'- -GCCGUAcC-UGCCGCU-ACCAGUGuuGC- -5'
18184 3' -55 NC_004680.1 + 34644 0.66 0.770756
Target:  5'- aCGGCAcccacaacaUGGGCGGCGcagacGGaUACGACu -3'
miRNA:   3'- -GCCGU---------ACCUGCCGCua---CCaGUGUUGc -5'
18184 3' -55 NC_004680.1 + 47844 0.66 0.760686
Target:  5'- cCGGC-UGGcuGCGGCGGUuggccgGGUCGCugaGAUGa -3'
miRNA:   3'- -GCCGuACC--UGCCGCUA------CCAGUG---UUGC- -5'
18184 3' -55 NC_004680.1 + 51359 0.66 0.760686
Target:  5'- aGGgGUGGGCGGa-AUGGcUCACGAa- -3'
miRNA:   3'- gCCgUACCUGCCgcUACC-AGUGUUgc -5'
18184 3' -55 NC_004680.1 + 56622 0.67 0.687207
Target:  5'- aCGGCA-GGGCgagGGCGAU-GUCuCGGCGg -3'
miRNA:   3'- -GCCGUaCCUG---CCGCUAcCAGuGUUGC- -5'
18184 3' -55 NC_004680.1 + 43393 0.67 0.687207
Target:  5'- cCGGCA-GG-CGGCGAUccuugCGCAGCGu -3'
miRNA:   3'- -GCCGUaCCuGCCGCUAcca--GUGUUGC- -5'
18184 3' -55 NC_004680.1 + 41851 0.68 0.676416
Target:  5'- uGGCGcuUGGACGGgGcaGGUC-CAGCa -3'
miRNA:   3'- gCCGU--ACCUGCCgCuaCCAGuGUUGc -5'
18184 3' -55 NC_004680.1 + 11068 0.68 0.676416
Target:  5'- uGGCAUccugcugccGGGCGGCcuUGGUgGCGGCc -3'
miRNA:   3'- gCCGUA---------CCUGCCGcuACCAgUGUUGc -5'
18184 3' -55 NC_004680.1 + 34808 0.68 0.665583
Target:  5'- uCGcGCAgugucaccagGGAaGGUGAUGGUCACcGCGc -3'
miRNA:   3'- -GC-CGUa---------CCUgCCGCUACCAGUGuUGC- -5'
18184 3' -55 NC_004680.1 + 46362 0.68 0.665583
Target:  5'- aCGGCccGGGCGGUGcUGGUaACAcCGu -3'
miRNA:   3'- -GCCGuaCCUGCCGCuACCAgUGUuGC- -5'
18184 3' -55 NC_004680.1 + 12623 0.68 0.65472
Target:  5'- uGGCGcUGGAC-GCGAUGG-CACccGGCGc -3'
miRNA:   3'- gCCGU-ACCUGcCGCUACCaGUG--UUGC- -5'
18184 3' -55 NC_004680.1 + 23203 0.68 0.65472
Target:  5'- gCGGCAggcaccuaugUGGAgGGCGGcaucUGGUCGgcCAGCu -3'
miRNA:   3'- -GCCGU----------ACCUgCCGCU----ACCAGU--GUUGc -5'
18184 3' -55 NC_004680.1 + 25355 0.68 0.643836
Target:  5'- uCGGCGUcaagcuCGGCGGUaGUCGCGGCGc -3'
miRNA:   3'- -GCCGUAccu---GCCGCUAcCAGUGUUGC- -5'
18184 3' -55 NC_004680.1 + 19355 0.68 0.622047
Target:  5'- gCGGUcgGuGGCGGUGGUGGUggugCGCAGgGc -3'
miRNA:   3'- -GCCGuaC-CUGCCGCUACCA----GUGUUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.