miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18184 3' -55 NC_004680.1 + 22372 1.1 0.001169
Target:  5'- uCGGCAUGGACGGCGAUGGUCACAACGg -3'
miRNA:   3'- -GCCGUACCUGCCGCUACCAGUGUUGC- -5'
18184 3' -55 NC_004680.1 + 12572 0.82 0.105925
Target:  5'- uCGGCAUGGACGGCGgcGGUgCGCu-CGg -3'
miRNA:   3'- -GCCGUACCUGCCGCuaCCA-GUGuuGC- -5'
18184 3' -55 NC_004680.1 + 52823 0.8 0.1345
Target:  5'- gGGCcUGGGCGGCGAgaaucacggaaagGGUCACGGCu -3'
miRNA:   3'- gCCGuACCUGCCGCUa------------CCAGUGUUGc -5'
18184 3' -55 NC_004680.1 + 27841 0.75 0.299128
Target:  5'- uCGGCGgccGGACGGUGGUGGacgcgCugGGCGc -3'
miRNA:   3'- -GCCGUa--CCUGCCGCUACCa----GugUUGC- -5'
18184 3' -55 NC_004680.1 + 55237 0.72 0.425496
Target:  5'- gGGuCGUGGACGGUGAgugagcgucUGGUcCACggUGg -3'
miRNA:   3'- gCC-GUACCUGCCGCU---------ACCA-GUGuuGC- -5'
18184 3' -55 NC_004680.1 + 15812 0.71 0.474139
Target:  5'- cCGGCAUGGACGGCGu--GUUuuauGCGcccGCGg -3'
miRNA:   3'- -GCCGUACCUGCCGCuacCAG----UGU---UGC- -5'
18184 3' -55 NC_004680.1 + 30940 0.7 0.557169
Target:  5'- uCGGUGUGGcUGGCGGUcGUCGCGGgGa -3'
miRNA:   3'- -GCCGUACCuGCCGCUAcCAGUGUUgC- -5'
18184 3' -55 NC_004680.1 + 16907 0.69 0.567881
Target:  5'- aGGCguggaaGUGGACGGCGGUgugaucucGGUgaACGACGc -3'
miRNA:   3'- gCCG------UACCUGCCGCUA--------CCAg-UGUUGC- -5'
18184 3' -55 NC_004680.1 + 16244 0.69 0.577566
Target:  5'- gGGCAagacGACGGCGAcGGUgcaguucCGCAACGg -3'
miRNA:   3'- gCCGUac--CUGCCGCUaCCA-------GUGUUGC- -5'
18184 3' -55 NC_004680.1 + 43325 0.69 0.578645
Target:  5'- aGGCAUGc-CGGUGAgcagUGGUCACuGACGc -3'
miRNA:   3'- gCCGUACcuGCCGCU----ACCAGUG-UUGC- -5'
18184 3' -55 NC_004680.1 + 19355 0.68 0.622047
Target:  5'- gCGGUcgGuGGCGGUGGUGGUggugCGCAGgGc -3'
miRNA:   3'- -GCCGuaC-CUGCCGCUACCA----GUGUUgC- -5'
18184 3' -55 NC_004680.1 + 25355 0.68 0.643836
Target:  5'- uCGGCGUcaagcuCGGCGGUaGUCGCGGCGc -3'
miRNA:   3'- -GCCGUAccu---GCCGCUAcCAGUGUUGC- -5'
18184 3' -55 NC_004680.1 + 12623 0.68 0.65472
Target:  5'- uGGCGcUGGAC-GCGAUGG-CACccGGCGc -3'
miRNA:   3'- gCCGU-ACCUGcCGCUACCaGUG--UUGC- -5'
18184 3' -55 NC_004680.1 + 23203 0.68 0.65472
Target:  5'- gCGGCAggcaccuaugUGGAgGGCGGcaucUGGUCGgcCAGCu -3'
miRNA:   3'- -GCCGU----------ACCUgCCGCU----ACCAGU--GUUGc -5'
18184 3' -55 NC_004680.1 + 34808 0.68 0.665583
Target:  5'- uCGcGCAgugucaccagGGAaGGUGAUGGUCACcGCGc -3'
miRNA:   3'- -GC-CGUa---------CCUgCCGCUACCAGUGuUGC- -5'
18184 3' -55 NC_004680.1 + 46362 0.68 0.665583
Target:  5'- aCGGCccGGGCGGUGcUGGUaACAcCGu -3'
miRNA:   3'- -GCCGuaCCUGCCGCuACCAgUGUuGC- -5'
18184 3' -55 NC_004680.1 + 11068 0.68 0.676416
Target:  5'- uGGCAUccugcugccGGGCGGCcuUGGUgGCGGCc -3'
miRNA:   3'- gCCGUA---------CCUGCCGcuACCAgUGUUGc -5'
18184 3' -55 NC_004680.1 + 41851 0.68 0.676416
Target:  5'- uGGCGcuUGGACGGgGcaGGUC-CAGCa -3'
miRNA:   3'- gCCGU--ACCUGCCgCuaCCAGuGUUGc -5'
18184 3' -55 NC_004680.1 + 43393 0.67 0.687207
Target:  5'- cCGGCA-GG-CGGCGAUccuugCGCAGCGu -3'
miRNA:   3'- -GCCGUaCCuGCCGCUAcca--GUGUUGC- -5'
18184 3' -55 NC_004680.1 + 56622 0.67 0.687207
Target:  5'- aCGGCA-GGGCgagGGCGAU-GUCuCGGCGg -3'
miRNA:   3'- -GCCGUaCCUG---CCGCUAcCAGuGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.