miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18185 3' -52.7 NC_004680.1 + 46004 0.66 0.898811
Target:  5'- --gCCGaAUGCGcccgcacccaaggcCGCC-CCGUCACCg -3'
miRNA:   3'- caaGGC-UAUGCua------------GCGGaGGCAGUGG- -5'
18185 3' -52.7 NC_004680.1 + 22629 0.66 0.898116
Target:  5'- --gCCGAUaaGCGucAUUGCCgaUCCGUCAUa -3'
miRNA:   3'- caaGGCUA--UGC--UAGCGG--AGGCAGUGg -5'
18185 3' -52.7 NC_004680.1 + 12660 0.66 0.87605
Target:  5'- aUUCCGA-GCGcacCGCCgCCGUCcauGCCg -3'
miRNA:   3'- cAAGGCUaUGCua-GCGGaGGCAG---UGG- -5'
18185 3' -52.7 NC_004680.1 + 39488 0.66 0.868183
Target:  5'- -aUCCGAaACGccagcggUGCCUaCCGUCuGCCa -3'
miRNA:   3'- caAGGCUaUGCua-----GCGGA-GGCAG-UGG- -5'
18185 3' -52.7 NC_004680.1 + 45761 0.66 0.868183
Target:  5'- --cUCGAaGCGAUCGCCUacaUCGUCcucgcauucACCg -3'
miRNA:   3'- caaGGCUaUGCUAGCGGA---GGCAG---------UGG- -5'
18185 3' -52.7 NC_004680.1 + 11994 0.67 0.834339
Target:  5'- cGUUCUGAUGCucaccguacuGAUCaGCCgcaUgGUCACCg -3'
miRNA:   3'- -CAAGGCUAUG----------CUAG-CGGa--GgCAGUGG- -5'
18185 3' -52.7 NC_004680.1 + 12183 0.67 0.825324
Target:  5'- cGUUCCGAcggugGCGGUagcCGCC-CCGUcCGCg -3'
miRNA:   3'- -CAAGGCUa----UGCUA---GCGGaGGCA-GUGg -5'
18185 3' -52.7 NC_004680.1 + 31534 0.68 0.806696
Target:  5'- -aUUCGGUAUGAcuaaagcgcuUgGCCUUCGUgGCCg -3'
miRNA:   3'- caAGGCUAUGCU----------AgCGGAGGCAgUGG- -5'
18185 3' -52.7 NC_004680.1 + 14412 0.68 0.806696
Target:  5'- -cUCUGGUGCagGAUuugacgucugUGCCgCCGUCGCCg -3'
miRNA:   3'- caAGGCUAUG--CUA----------GCGGaGGCAGUGG- -5'
18185 3' -52.7 NC_004680.1 + 12400 0.68 0.797102
Target:  5'- --cCCGAagcgGCGGUCGCCcCCGcC-CCa -3'
miRNA:   3'- caaGGCUa---UGCUAGCGGaGGCaGuGG- -5'
18185 3' -52.7 NC_004680.1 + 51192 0.68 0.797102
Target:  5'- cGUUCCG-UGCGGgaacuugacgCGCUUCuCGUCgGCCa -3'
miRNA:   3'- -CAAGGCuAUGCUa---------GCGGAG-GCAG-UGG- -5'
18185 3' -52.7 NC_004680.1 + 11180 0.68 0.767331
Target:  5'- cGUUCUGcUugGG-CGCCggggCCGcCACCa -3'
miRNA:   3'- -CAAGGCuAugCUaGCGGa---GGCaGUGG- -5'
18185 3' -52.7 NC_004680.1 + 1555 0.69 0.736309
Target:  5'- --aCCGGUACGGUCGUagUCCuUCGCg -3'
miRNA:   3'- caaGGCUAUGCUAGCGg-AGGcAGUGg -5'
18185 3' -52.7 NC_004680.1 + 6244 0.69 0.715084
Target:  5'- uUUgUGGcUGCGGUCGCUgcaCGUCACCu -3'
miRNA:   3'- cAAgGCU-AUGCUAGCGGag-GCAGUGG- -5'
18185 3' -52.7 NC_004680.1 + 26315 0.7 0.704343
Target:  5'- -gUCCGGUucCGAUCGCCcCCGcUACUc -3'
miRNA:   3'- caAGGCUAu-GCUAGCGGaGGCaGUGG- -5'
18185 3' -52.7 NC_004680.1 + 57600 0.7 0.704343
Target:  5'- --aCCGAacaagacuCGAUCGCCgUCCGggaaCACCg -3'
miRNA:   3'- caaGGCUau------GCUAGCGG-AGGCa---GUGG- -5'
18185 3' -52.7 NC_004680.1 + 56870 0.7 0.671743
Target:  5'- -cUCCGA-AUGAUCGCCgacacaugCCgGUCAUCg -3'
miRNA:   3'- caAGGCUaUGCUAGCGGa-------GG-CAGUGG- -5'
18185 3' -52.7 NC_004680.1 + 28890 0.7 0.660787
Target:  5'- ---gUGAUcGCGAUCGCCUCCGguagcggUGCCu -3'
miRNA:   3'- caagGCUA-UGCUAGCGGAGGCa------GUGG- -5'
18185 3' -52.7 NC_004680.1 + 8055 0.71 0.6168
Target:  5'- --aCCGAgUACGA-CuUCUCCGUCACCu -3'
miRNA:   3'- caaGGCU-AUGCUaGcGGAGGCAGUGG- -5'
18185 3' -52.7 NC_004680.1 + 5578 0.71 0.594848
Target:  5'- -gUUCGggACGuUCGCCUUCGUCAgCu -3'
miRNA:   3'- caAGGCuaUGCuAGCGGAGGCAGUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.