miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18185 5' -53.6 NC_004680.1 + 16958 0.66 0.819867
Target:  5'- cCGGUggUGAcucgacCGCUgacggguucgUGUUGGCGGCgCAa -3'
miRNA:   3'- aGCCGuuACU------GCGA----------AUAGCCGUCG-GU- -5'
18185 5' -53.6 NC_004680.1 + 18432 0.66 0.819867
Target:  5'- aCGGUggUGucCGCUauccgCGGCGGCg- -3'
miRNA:   3'- aGCCGuuACu-GCGAaua--GCCGUCGgu -5'
18185 5' -53.6 NC_004680.1 + 41856 0.66 0.810383
Target:  5'- -aGGC-AUGGCGCUUGgacggGGCAGguCCAg -3'
miRNA:   3'- agCCGuUACUGCGAAUag---CCGUC--GGU- -5'
18185 5' -53.6 NC_004680.1 + 8922 0.66 0.810383
Target:  5'- gCGGCGAcacACGCUUAccguccuugaaaUaCGGCGGCCc -3'
miRNA:   3'- aGCCGUUac-UGCGAAU------------A-GCCGUCGGu -5'
18185 5' -53.6 NC_004680.1 + 9565 0.66 0.800705
Target:  5'- gCGGCuggGGCGCguggcgguUCGGCugcuGGCCGc -3'
miRNA:   3'- aGCCGuuaCUGCGaau-----AGCCG----UCGGU- -5'
18185 5' -53.6 NC_004680.1 + 9721 0.66 0.800705
Target:  5'- gCGGCgAAUGGUGU--GUCGGCgGGCCGg -3'
miRNA:   3'- aGCCG-UUACUGCGaaUAGCCG-UCGGU- -5'
18185 5' -53.6 NC_004680.1 + 12584 0.66 0.800705
Target:  5'- gCGGCGGUG-CGCUcggaauggCGGUgcaGGCCGg -3'
miRNA:   3'- aGCCGUUACuGCGAaua-----GCCG---UCGGU- -5'
18185 5' -53.6 NC_004680.1 + 3162 0.66 0.787854
Target:  5'- gUCGGCGAUcaaggagcauauucGACaGCUgucGUCGGCGaCCAa -3'
miRNA:   3'- -AGCCGUUA--------------CUG-CGAa--UAGCCGUcGGU- -5'
18185 5' -53.6 NC_004680.1 + 26806 0.66 0.780816
Target:  5'- aUCGGCGAUGAcCGCaaGUgGuGguGCCc -3'
miRNA:   3'- -AGCCGUUACU-GCGaaUAgC-CguCGGu -5'
18185 5' -53.6 NC_004680.1 + 21259 0.66 0.780816
Target:  5'- gUCGGCc--GGgGCUggUGUCGGUAGCg- -3'
miRNA:   3'- -AGCCGuuaCUgCGA--AUAGCCGUCGgu -5'
18185 5' -53.6 NC_004680.1 + 26558 0.66 0.780816
Target:  5'- gUCGGCGAUGcggucaGCGaucUGUCGGCgAGCg- -3'
miRNA:   3'- -AGCCGUUAC------UGCga-AUAGCCG-UCGgu -5'
18185 5' -53.6 NC_004680.1 + 34282 0.66 0.774721
Target:  5'- cCGGCAG-GGCGCUUuuuugcguucuggCGGguGUCAc -3'
miRNA:   3'- aGCCGUUaCUGCGAAua-----------GCCguCGGU- -5'
18185 5' -53.6 NC_004680.1 + 29891 0.66 0.770626
Target:  5'- uUCGGCGAugcgcaccUGGCGCagGUCGcUAGUCAg -3'
miRNA:   3'- -AGCCGUU--------ACUGCGaaUAGCcGUCGGU- -5'
18185 5' -53.6 NC_004680.1 + 46621 0.67 0.76029
Target:  5'- uUCGGCGGUGAUGCgucgugaggAUCaGGUcaaucaAGCCu -3'
miRNA:   3'- -AGCCGUUACUGCGaa-------UAG-CCG------UCGGu -5'
18185 5' -53.6 NC_004680.1 + 27917 0.67 0.749818
Target:  5'- -gGGCAAguccUGAUGCgcAUCGaCGGCCAu -3'
miRNA:   3'- agCCGUU----ACUGCGaaUAGCcGUCGGU- -5'
18185 5' -53.6 NC_004680.1 + 34477 0.67 0.747708
Target:  5'- gUCGGCGAugcUGACGaucgcccaCGuGCAGCCGg -3'
miRNA:   3'- -AGCCGUU---ACUGCgaaua---GC-CGUCGGU- -5'
18185 5' -53.6 NC_004680.1 + 54972 0.67 0.725283
Target:  5'- cCGGCAcgaucgGugGCggGUCggaaugaaacgucgGGCGGCCAg -3'
miRNA:   3'- aGCCGUua----CugCGaaUAG--------------CCGUCGGU- -5'
18185 5' -53.6 NC_004680.1 + 21607 0.67 0.717709
Target:  5'- uUCGaGCGggGUGACGCUgcaggcguucUCGGCcggGGCCGg -3'
miRNA:   3'- -AGC-CGU--UACUGCGAau--------AGCCG---UCGGU- -5'
18185 5' -53.6 NC_004680.1 + 29232 0.67 0.717709
Target:  5'- gCGGCAGUGAcCGCUcuaGUCGccgaAGCCGu -3'
miRNA:   3'- aGCCGUUACU-GCGAa--UAGCcg--UCGGU- -5'
18185 5' -53.6 NC_004680.1 + 24007 0.68 0.706815
Target:  5'- gUCGGUAAUGAuucuCGCcUGUCGGauCAGCgGg -3'
miRNA:   3'- -AGCCGUUACU----GCGaAUAGCC--GUCGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.