miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18187 3' -58.5 NC_004680.1 + 19713 0.66 0.552272
Target:  5'- -cCGGGCCUCGGCCAacagGUUucGACa -3'
miRNA:   3'- ccGUCCGGGGCCGGUgacaCAAu-CUG- -5'
18187 3' -58.5 NC_004680.1 + 8371 0.66 0.541752
Target:  5'- uGGguGGCCCgGGCUggGCUGagcaGUacucGGACg -3'
miRNA:   3'- -CCguCCGGGgCCGG--UGACa---CAa---UCUG- -5'
18187 3' -58.5 NC_004680.1 + 8326 0.67 0.494325
Target:  5'- cGGCGGGaacgaucgcccugguUCCCGGCUACuucuaUGUG-UGGAUg -3'
miRNA:   3'- -CCGUCC---------------GGGGCCGGUG-----ACACaAUCUG- -5'
18187 3' -58.5 NC_004680.1 + 19245 0.68 0.450811
Target:  5'- cGGCGGGCUauCCGGCgAC-GUGUUGu-- -3'
miRNA:   3'- -CCGUCCGG--GGCCGgUGaCACAAUcug -5'
18187 3' -58.5 NC_004680.1 + 41334 0.68 0.428917
Target:  5'- cGGCAucaucGGCCCCGGCCucgccgcaccacacGCUGaagcuGACa -3'
miRNA:   3'- -CCGU-----CCGGGGCCGG--------------UGACacaauCUG- -5'
18187 3' -58.5 NC_004680.1 + 44862 0.68 0.404033
Target:  5'- cGGCAcaacaGCCuuGGCCAgaGUGUggauucgGGACu -3'
miRNA:   3'- -CCGUc----CGGggCCGGUgaCACAa------UCUG- -5'
18187 3' -58.5 NC_004680.1 + 13428 0.7 0.335904
Target:  5'- uGGUGGGCaCCGGuCCGCUG-GUUccaAGGCg -3'
miRNA:   3'- -CCGUCCGgGGCC-GGUGACaCAA---UCUG- -5'
18187 3' -58.5 NC_004680.1 + 653 0.7 0.305122
Target:  5'- uGGUguucGGCCCUGGCuCACUGUcg-GGGCa -3'
miRNA:   3'- -CCGu---CCGGGGCCG-GUGACAcaaUCUG- -5'
18187 3' -58.5 NC_004680.1 + 25047 0.76 0.136402
Target:  5'- aGGCAGGUCCCGGUgGCgGUG--GGGCc -3'
miRNA:   3'- -CCGUCCGGGGCCGgUGaCACaaUCUG- -5'
18187 3' -58.5 NC_004680.1 + 23494 1.11 0.000319
Target:  5'- gGGCAGGCCCCGGCCACUGUGUUAGACa -3'
miRNA:   3'- -CCGUCCGGGGCCGGUGACACAAUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.