miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18187 5' -46.6 NC_004680.1 + 3783 0.66 0.996814
Target:  5'- cCGGUgcCACCGAAGauGUCAACucuugcaguccACUGUCa -3'
miRNA:   3'- -GCUA--GUGGCUUUacUAGUUG-----------UGACGG- -5'
18187 5' -46.6 NC_004680.1 + 28392 0.66 0.996814
Target:  5'- uGAacgCAUCGAAAcccaCGGCGCUGCCc -3'
miRNA:   3'- gCUa--GUGGCUUUacuaGUUGUGACGG- -5'
18187 5' -46.6 NC_004680.1 + 55968 0.66 0.996193
Target:  5'- ---aCGCCGAuc----CAACGCUGCCc -3'
miRNA:   3'- gcuaGUGGCUuuacuaGUUGUGACGG- -5'
18187 5' -46.6 NC_004680.1 + 29080 0.66 0.996193
Target:  5'- gCGG-CGCCGcAGUGGUgu-CACUGCUg -3'
miRNA:   3'- -GCUaGUGGCuUUACUAguuGUGACGG- -5'
18187 5' -46.6 NC_004680.1 + 18053 0.66 0.995476
Target:  5'- gCGGUCAgCGAAGggcaGA-CGAuCACUGCUc -3'
miRNA:   3'- -GCUAGUgGCUUUa---CUaGUU-GUGACGG- -5'
18187 5' -46.6 NC_004680.1 + 12232 0.66 0.994654
Target:  5'- gCGGcagCGCCGGAcgGGUUGAUGUUGCCc -3'
miRNA:   3'- -GCUa--GUGGCUUuaCUAGUUGUGACGG- -5'
18187 5' -46.6 NC_004680.1 + 19531 0.66 0.994654
Target:  5'- -uGUCGCCGAAAUGcUCAccGCGCacCCa -3'
miRNA:   3'- gcUAGUGGCUUUACuAGU--UGUGacGG- -5'
18187 5' -46.6 NC_004680.1 + 35649 0.66 0.994654
Target:  5'- --uUUGCCGAacauuuuccgGAUGAUUGGCGCcaUGCCa -3'
miRNA:   3'- gcuAGUGGCU----------UUACUAGUUGUG--ACGG- -5'
18187 5' -46.6 NC_004680.1 + 10009 0.66 0.994654
Target:  5'- cCGGUCggGCCGGc---AUCGACgucGCUGCCg -3'
miRNA:   3'- -GCUAG--UGGCUuuacUAGUUG---UGACGG- -5'
18187 5' -46.6 NC_004680.1 + 15109 0.66 0.994104
Target:  5'- aCGAUCcgGCCGGuuucaacaucguugcGcgGGUCAGCACccgacGCCu -3'
miRNA:   3'- -GCUAG--UGGCU---------------UuaCUAGUUGUGa----CGG- -5'
18187 5' -46.6 NC_004680.1 + 32236 0.66 0.993714
Target:  5'- aCGAUgGCUGAAAgaaggcUGA-CAugACUGCa -3'
miRNA:   3'- -GCUAgUGGCUUU------ACUaGUugUGACGg -5'
18187 5' -46.6 NC_004680.1 + 23999 0.66 0.993714
Target:  5'- aGA-CGCCGAAugcGUGugCGACGCgGCCg -3'
miRNA:   3'- gCUaGUGGCUU---UACuaGUUGUGaCGG- -5'
18187 5' -46.6 NC_004680.1 + 20752 0.66 0.993302
Target:  5'- uGAUCgGCCGAugggccgGGUCAACAaucuccagcaccaUGCCg -3'
miRNA:   3'- gCUAG-UGGCUuua----CUAGUUGUg------------ACGG- -5'
18187 5' -46.6 NC_004680.1 + 43627 0.67 0.992646
Target:  5'- uGAUUACCGcGAggGA-CGACGCgaaaGCCg -3'
miRNA:   3'- gCUAGUGGC-UUuaCUaGUUGUGa---CGG- -5'
18187 5' -46.6 NC_004680.1 + 19510 0.67 0.991438
Target:  5'- uGGUgGCCcGGGUGA-CGGCGCcGCCg -3'
miRNA:   3'- gCUAgUGGcUUUACUaGUUGUGaCGG- -5'
18187 5' -46.6 NC_004680.1 + 18152 0.67 0.990078
Target:  5'- aCGAaCAcCCGAgcAGUGAUCGu--CUGCCc -3'
miRNA:   3'- -GCUaGU-GGCU--UUACUAGUuguGACGG- -5'
18187 5' -46.6 NC_004680.1 + 3835 0.67 0.990078
Target:  5'- gCGAUguaCACCGAA---GUCAugGCaGCCa -3'
miRNA:   3'- -GCUA---GUGGCUUuacUAGUugUGaCGG- -5'
18187 5' -46.6 NC_004680.1 + 44557 0.67 0.988555
Target:  5'- aCGAaCGCCGc-AUGAUCGACGCccuggUGUCc -3'
miRNA:   3'- -GCUaGUGGCuuUACUAGUUGUG-----ACGG- -5'
18187 5' -46.6 NC_004680.1 + 51598 0.67 0.988555
Target:  5'- cCGAaC-CCGAAGUGAUCcAGgGCgaGCCg -3'
miRNA:   3'- -GCUaGuGGCUUUACUAG-UUgUGa-CGG- -5'
18187 5' -46.6 NC_004680.1 + 1663 0.67 0.988555
Target:  5'- uGGUCACUGAGAUug-CGACGg-GCCg -3'
miRNA:   3'- gCUAGUGGCUUUAcuaGUUGUgaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.