miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18187 5' -46.6 NC_004680.1 + 23530 1.13 0.00533
Target:  5'- gCGAUCACCGAAAUGAUCAACACUGCCc -3'
miRNA:   3'- -GCUAGUGGCUUUACUAGUUGUGACGG- -5'
18187 5' -46.6 NC_004680.1 + 30957 0.81 0.449799
Target:  5'- -cGUCGCgGGGAUGAUCGucGCACUGCUg -3'
miRNA:   3'- gcUAGUGgCUUUACUAGU--UGUGACGG- -5'
18187 5' -46.6 NC_004680.1 + 14241 0.8 0.492142
Target:  5'- -uGUCGCCuGAGUGAUCAACGC-GCCa -3'
miRNA:   3'- gcUAGUGGcUUUACUAGUUGUGaCGG- -5'
18187 5' -46.6 NC_004680.1 + 28300 0.79 0.558793
Target:  5'- gGAaCACCGGugccgcacacGGUGAUCAGCACggGCCg -3'
miRNA:   3'- gCUaGUGGCU----------UUACUAGUUGUGa-CGG- -5'
18187 5' -46.6 NC_004680.1 + 20781 0.78 0.620794
Target:  5'- uCGAUCGCUGAcAUGuUCAacccgaacuuccucgACGCUGCCg -3'
miRNA:   3'- -GCUAGUGGCUuUACuAGU---------------UGUGACGG- -5'
18187 5' -46.6 NC_004680.1 + 4421 0.78 0.627733
Target:  5'- aGAcCGCCGAGggGGUCAGCGCUGg- -3'
miRNA:   3'- gCUaGUGGCUUuaCUAGUUGUGACgg -5'
18187 5' -46.6 NC_004680.1 + 49288 0.75 0.773983
Target:  5'- aCGggCACCu-GAUGGggcUCGAUACUGCCg -3'
miRNA:   3'- -GCuaGUGGcuUUACU---AGUUGUGACGG- -5'
18187 5' -46.6 NC_004680.1 + 47867 0.73 0.852292
Target:  5'- gGGUCGCUGAGAUGAagUCGAUugauCgUGCCu -3'
miRNA:   3'- gCUAGUGGCUUUACU--AGUUGu---G-ACGG- -5'
18187 5' -46.6 NC_004680.1 + 37377 0.73 0.869536
Target:  5'- cCGGUUACCGAAAUGAcgccgauguccuUCu-CACcGCCg -3'
miRNA:   3'- -GCUAGUGGCUUUACU------------AGuuGUGaCGG- -5'
18187 5' -46.6 NC_004680.1 + 37865 0.72 0.885692
Target:  5'- uGGagAUCGAAGUGGUCAccgGCaugACUGCCg -3'
miRNA:   3'- gCUagUGGCUUUACUAGU---UG---UGACGG- -5'
18187 5' -46.6 NC_004680.1 + 17423 0.72 0.885692
Target:  5'- uGAUCcguuGCCGGAGUGGgcUCAuGCGgUGCCg -3'
miRNA:   3'- gCUAG----UGGCUUUACU--AGU-UGUgACGG- -5'
18187 5' -46.6 NC_004680.1 + 42192 0.72 0.893343
Target:  5'- aGAUCGCCGAA-----CAGCuggGCUGCCa -3'
miRNA:   3'- gCUAGUGGCUUuacuaGUUG---UGACGG- -5'
18187 5' -46.6 NC_004680.1 + 14935 0.72 0.900703
Target:  5'- gGGUCGCCGGAcUGGagGGCcgAUUGCCa -3'
miRNA:   3'- gCUAGUGGCUUuACUagUUG--UGACGG- -5'
18187 5' -46.6 NC_004680.1 + 56490 0.71 0.911859
Target:  5'- aCGAUCACCGccgcaaacUCAACAC-GCCa -3'
miRNA:   3'- -GCUAGUGGCuuuacu--AGUUGUGaCGG- -5'
18187 5' -46.6 NC_004680.1 + 23594 0.71 0.920986
Target:  5'- uGAUCGCCGAAGaccuGUCuAACACagugGCCg -3'
miRNA:   3'- gCUAGUGGCUUUac--UAG-UUGUGa---CGG- -5'
18187 5' -46.6 NC_004680.1 + 34431 0.71 0.927139
Target:  5'- gGAUCACCGGAucGUGuUCcGCACgagcgGCUg -3'
miRNA:   3'- gCUAGUGGCUU--UACuAGuUGUGa----CGG- -5'
18187 5' -46.6 NC_004680.1 + 7814 0.71 0.931265
Target:  5'- --uUCGCCGGAagGUGAacggcaaguacgagUaCAACACUGCCc -3'
miRNA:   3'- gcuAGUGGCUU--UACU--------------A-GUUGUGACGG- -5'
18187 5' -46.6 NC_004680.1 + 858 0.71 0.932987
Target:  5'- gGAggCGCCGGuucgguGUGAcggguUUGACGCUGCCg -3'
miRNA:   3'- gCUa-GUGGCUu-----UACU-----AGUUGUGACGG- -5'
18187 5' -46.6 NC_004680.1 + 20893 0.71 0.932987
Target:  5'- -uGUCACCGGAgucguAUGAggCGugGCUGUCa -3'
miRNA:   3'- gcUAGUGGCUU-----UACUa-GUugUGACGG- -5'
18187 5' -46.6 NC_004680.1 + 4933 0.71 0.938531
Target:  5'- ---aCACCGGc-UGAguaugCGGCGCUGCCg -3'
miRNA:   3'- gcuaGUGGCUuuACUa----GUUGUGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.