miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18187 5' -46.6 NC_004680.1 + 858 0.71 0.932987
Target:  5'- gGAggCGCCGGuucgguGUGAcggguUUGACGCUGCCg -3'
miRNA:   3'- gCUa-GUGGCUu-----UACU-----AGUUGUGACGG- -5'
18187 5' -46.6 NC_004680.1 + 1663 0.67 0.988555
Target:  5'- uGGUCACUGAGAUug-CGACGg-GCCg -3'
miRNA:   3'- gCUAGUGGCUUUAcuaGUUGUgaCGG- -5'
18187 5' -46.6 NC_004680.1 + 3783 0.66 0.996814
Target:  5'- cCGGUgcCACCGAAGauGUCAACucuugcaguccACUGUCa -3'
miRNA:   3'- -GCUA--GUGGCUUUacUAGUUG-----------UGACGG- -5'
18187 5' -46.6 NC_004680.1 + 3835 0.67 0.990078
Target:  5'- gCGAUguaCACCGAA---GUCAugGCaGCCa -3'
miRNA:   3'- -GCUA---GUGGCUUuacUAGUugUGaCGG- -5'
18187 5' -46.6 NC_004680.1 + 4421 0.78 0.627733
Target:  5'- aGAcCGCCGAGggGGUCAGCGCUGg- -3'
miRNA:   3'- gCUaGUGGCUUuaCUAGUUGUGACgg -5'
18187 5' -46.6 NC_004680.1 + 4933 0.71 0.938531
Target:  5'- ---aCACCGGc-UGAguaugCGGCGCUGCCg -3'
miRNA:   3'- gcuaGUGGCUuuACUa----GUUGUGACGG- -5'
18187 5' -46.6 NC_004680.1 + 7814 0.71 0.931265
Target:  5'- --uUCGCCGGAagGUGAacggcaaguacgagUaCAACACUGCCc -3'
miRNA:   3'- gcuAGUGGCUU--UACU--------------A-GUUGUGACGG- -5'
18187 5' -46.6 NC_004680.1 + 10009 0.66 0.994654
Target:  5'- cCGGUCggGCCGGc---AUCGACgucGCUGCCg -3'
miRNA:   3'- -GCUAG--UGGCUuuacUAGUUG---UGACGG- -5'
18187 5' -46.6 NC_004680.1 + 11728 0.68 0.982885
Target:  5'- gGGUUauagGCCGAAAUGGcCuGCaACUGCCc -3'
miRNA:   3'- gCUAG----UGGCUUUACUaGuUG-UGACGG- -5'
18187 5' -46.6 NC_004680.1 + 12232 0.66 0.994654
Target:  5'- gCGGcagCGCCGGAcgGGUUGAUGUUGCCc -3'
miRNA:   3'- -GCUa--GUGGCUUuaCUAGUUGUGACGG- -5'
18187 5' -46.6 NC_004680.1 + 14241 0.8 0.492142
Target:  5'- -uGUCGCCuGAGUGAUCAACGC-GCCa -3'
miRNA:   3'- gcUAGUGGcUUUACUAGUUGUGaCGG- -5'
18187 5' -46.6 NC_004680.1 + 14935 0.72 0.900703
Target:  5'- gGGUCGCCGGAcUGGagGGCcgAUUGCCa -3'
miRNA:   3'- gCUAGUGGCUUuACUagUUG--UGACGG- -5'
18187 5' -46.6 NC_004680.1 + 15109 0.66 0.994104
Target:  5'- aCGAUCcgGCCGGuuucaacaucguugcGcgGGUCAGCACccgacGCCu -3'
miRNA:   3'- -GCUAG--UGGCU---------------UuaCUAGUUGUGa----CGG- -5'
18187 5' -46.6 NC_004680.1 + 16811 0.68 0.984971
Target:  5'- uCGuUCACCGA---GAUC-ACACcGCCg -3'
miRNA:   3'- -GCuAGUGGCUuuaCUAGuUGUGaCGG- -5'
18187 5' -46.6 NC_004680.1 + 17157 0.69 0.969068
Target:  5'- aCGGcugCGCCGg---GAUCGACACcuggGCCa -3'
miRNA:   3'- -GCUa--GUGGCuuuaCUAGUUGUGa---CGG- -5'
18187 5' -46.6 NC_004680.1 + 17423 0.72 0.885692
Target:  5'- uGAUCcguuGCCGGAGUGGgcUCAuGCGgUGCCg -3'
miRNA:   3'- gCUAG----UGGCUUUACU--AGU-UGUgACGG- -5'
18187 5' -46.6 NC_004680.1 + 18053 0.66 0.995476
Target:  5'- gCGGUCAgCGAAGggcaGA-CGAuCACUGCUc -3'
miRNA:   3'- -GCUAGUgGCUUUa---CUaGUU-GUGACGG- -5'
18187 5' -46.6 NC_004680.1 + 18152 0.67 0.990078
Target:  5'- aCGAaCAcCCGAgcAGUGAUCGu--CUGCCc -3'
miRNA:   3'- -GCUaGU-GGCU--UUACUAGUuguGACGG- -5'
18187 5' -46.6 NC_004680.1 + 18883 0.68 0.984971
Target:  5'- gGAUCACCGAGuuucacGUCAACAuCUGg- -3'
miRNA:   3'- gCUAGUGGCUUuac---UAGUUGU-GACgg -5'
18187 5' -46.6 NC_004680.1 + 19510 0.67 0.991438
Target:  5'- uGGUgGCCcGGGUGA-CGGCGCcGCCg -3'
miRNA:   3'- gCUAgUGGcUUUACUaGUUGUGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.