miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18188 5' -55.7 NC_004680.1 + 16142 0.66 0.727757
Target:  5'- gGAACCCCGaCAacaaaUCUGACGGUAu -3'
miRNA:   3'- -CUUGGGGCaGUacuugGGACUGCCGU- -5'
18188 5' -55.7 NC_004680.1 + 38788 0.66 0.706496
Target:  5'- --cCCCCGcgCcgGGACCCUccaACGGCu -3'
miRNA:   3'- cuuGGGGCa-GuaCUUGGGAc--UGCCGu -5'
18188 5' -55.7 NC_004680.1 + 16541 0.67 0.662107
Target:  5'- --uCCCCGUgAUGAACCgCUGAUguuucgccaacggGGCc -3'
miRNA:   3'- cuuGGGGCAgUACUUGG-GACUG-------------CCGu -5'
18188 5' -55.7 NC_004680.1 + 12257 0.67 0.630384
Target:  5'- -cGCCaCCGUCGgaacgGAuACCUgGGCGGCAg -3'
miRNA:   3'- cuUGG-GGCAGUa----CU-UGGGaCUGCCGU- -5'
18188 5' -55.7 NC_004680.1 + 33630 0.68 0.565041
Target:  5'- cGGGCgCCCGUCAgGAAaCC-GGCGGCGa -3'
miRNA:   3'- -CUUG-GGGCAGUaCUUgGGaCUGCCGU- -5'
18188 5' -55.7 NC_004680.1 + 6949 0.68 0.554291
Target:  5'- cAACCUCGUcCAUGAacucguugacGCCCUGAUucaccucaGGCAg -3'
miRNA:   3'- cUUGGGGCA-GUACU----------UGGGACUG--------CCGU- -5'
18188 5' -55.7 NC_004680.1 + 26302 0.68 0.553219
Target:  5'- -cGCCCCcgcuacucguuugGUCAUGAcagucUCCUGAUGGCGa -3'
miRNA:   3'- cuUGGGG-------------CAGUACUu----GGGACUGCCGU- -5'
18188 5' -55.7 NC_004680.1 + 2868 0.69 0.53722
Target:  5'- -cGCCgCCGcCGguggugguguaccaGAACCCUGAUGGCAu -3'
miRNA:   3'- cuUGG-GGCaGUa-------------CUUGGGACUGCCGU- -5'
18188 5' -55.7 NC_004680.1 + 22349 0.7 0.441471
Target:  5'- cGAAgCCCuUCGUGAACCCgaguGCGGUAc -3'
miRNA:   3'- -CUUgGGGcAGUACUUGGGac--UGCCGU- -5'
18188 5' -55.7 NC_004680.1 + 42530 0.7 0.441471
Target:  5'- -cGCCCCGccUCAUGcgacacCCCUGAgCGGCGg -3'
miRNA:   3'- cuUGGGGC--AGUACuu----GGGACU-GCCGU- -5'
18188 5' -55.7 NC_004680.1 + 36733 0.71 0.431848
Target:  5'- uGGACCUCG-CGggcGAACuCCUGACGGUg -3'
miRNA:   3'- -CUUGGGGCaGUa--CUUG-GGACUGCCGu -5'
18188 5' -55.7 NC_004680.1 + 11040 0.71 0.422349
Target:  5'- cGGCCCCGUCgAUGucuCCCgccgucGAUGGCAu -3'
miRNA:   3'- cUUGGGGCAG-UACuu-GGGa-----CUGCCGU- -5'
18188 5' -55.7 NC_004680.1 + 21354 0.71 0.412977
Target:  5'- cAGCCCCGUCG---GCCacguaUGGCGGCGc -3'
miRNA:   3'- cUUGGGGCAGUacuUGGg----ACUGCCGU- -5'
18188 5' -55.7 NC_004680.1 + 25742 1.08 0.001192
Target:  5'- gGAACCCCGUCAUGAACCCUGACGGCAc -3'
miRNA:   3'- -CUUGGGGCAGUACUUGGGACUGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.