miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18191 3' -54.4 NC_004680.1 + 39416 0.66 0.784092
Target:  5'- cUGGCGUUUCggaUGCCAC-ACACgCGUUg -3'
miRNA:   3'- uGCCGCAGAGg--AUGGUGaUGUG-GUAG- -5'
18191 3' -54.4 NC_004680.1 + 50847 0.66 0.774056
Target:  5'- -gGGCGUUgaaCCUAUCGCgccaaGCACgAUCg -3'
miRNA:   3'- ugCCGCAGa--GGAUGGUGa----UGUGgUAG- -5'
18191 3' -54.4 NC_004680.1 + 2935 0.66 0.753551
Target:  5'- gGCGGCGgCgaaCCggUCACUACAgCAUCa -3'
miRNA:   3'- -UGCCGCaGa--GGauGGUGAUGUgGUAG- -5'
18191 3' -54.4 NC_004680.1 + 57840 0.66 0.753551
Target:  5'- cAUGGCGUCgucgUCgUACCAg-GCACCuUCa -3'
miRNA:   3'- -UGCCGCAG----AGgAUGGUgaUGUGGuAG- -5'
18191 3' -54.4 NC_004680.1 + 42670 0.66 0.753551
Target:  5'- gACGGCGcCUCCUA-CACggAUGCCGc- -3'
miRNA:   3'- -UGCCGCaGAGGAUgGUGa-UGUGGUag -5'
18191 3' -54.4 NC_004680.1 + 1660 0.67 0.732545
Target:  5'- cCGGCaccGUCUCaucaCACUGCACCAg- -3'
miRNA:   3'- uGCCG---CAGAGgaugGUGAUGUGGUag -5'
18191 3' -54.4 NC_004680.1 + 33062 0.67 0.721884
Target:  5'- -gGGUGUcCUCCguggACCGCaACACCGc- -3'
miRNA:   3'- ugCCGCA-GAGGa---UGGUGaUGUGGUag -5'
18191 3' -54.4 NC_004680.1 + 43399 0.68 0.667454
Target:  5'- gGCGGCGa-UCCUugCGCaGCGUCGUCa -3'
miRNA:   3'- -UGCCGCagAGGAugGUGaUGUGGUAG- -5'
18191 3' -54.4 NC_004680.1 + 4003 0.68 0.634304
Target:  5'- aGCGGCGUCcagUUCUACCGCcgcgucUugACCGg- -3'
miRNA:   3'- -UGCCGCAG---AGGAUGGUG------AugUGGUag -5'
18191 3' -54.4 NC_004680.1 + 25378 0.7 0.546499
Target:  5'- cGCGGCGcgUUUCUGCCGgUugGCgAUCa -3'
miRNA:   3'- -UGCCGCa-GAGGAUGGUgAugUGgUAG- -5'
18191 3' -54.4 NC_004680.1 + 45179 0.7 0.546499
Target:  5'- uCGGCGgCUCUcGCCGCgacgACACCAa- -3'
miRNA:   3'- uGCCGCaGAGGaUGGUGa---UGUGGUag -5'
18191 3' -54.4 NC_004680.1 + 41704 0.71 0.473014
Target:  5'- gACGGCGacauuuggUUCCUcaacgaauccgGCCACUACACCGc- -3'
miRNA:   3'- -UGCCGCa-------GAGGA-----------UGGUGAUGUGGUag -5'
18191 3' -54.4 NC_004680.1 + 28576 0.72 0.443058
Target:  5'- cACGGCGgCUCC--CCAaugGCACCAUCc -3'
miRNA:   3'- -UGCCGCaGAGGauGGUga-UGUGGUAG- -5'
18191 3' -54.4 NC_004680.1 + 11781 0.72 0.395617
Target:  5'- cCGGUGUgUCCaugACCGCUcuccccgggGCGCCGUCu -3'
miRNA:   3'- uGCCGCAgAGGa--UGGUGA---------UGUGGUAG- -5'
18191 3' -54.4 NC_004680.1 + 40849 0.73 0.386528
Target:  5'- gACGGUaUCgCCUACCugUACaaaGCCGUCa -3'
miRNA:   3'- -UGCCGcAGaGGAUGGugAUG---UGGUAG- -5'
18191 3' -54.4 NC_004680.1 + 53338 0.76 0.250041
Target:  5'- uCGGCGUUccaacagcaguugcCCUGCCGCUGCACCAa- -3'
miRNA:   3'- uGCCGCAGa-------------GGAUGGUGAUGUGGUag -5'
18191 3' -54.4 NC_004680.1 + 27324 1.09 0.001263
Target:  5'- aACGGCGUCUCCUACCACUACACCAUCu -3'
miRNA:   3'- -UGCCGCAGAGGAUGGUGAUGUGGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.