miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18191 5' -55.4 NC_004680.1 + 53507 0.67 0.696451
Target:  5'- gCCGuu-GUGGaGUGugGGUaugGGUCGAUg -3'
miRNA:   3'- -GGCuacCACCaCACugCCA---CCAGCUA- -5'
18191 5' -55.4 NC_004680.1 + 34622 0.67 0.664183
Target:  5'- gUGGUGGUGGUugGUG-UGGUGGUuugUGAUg -3'
miRNA:   3'- gGCUACCACCA--CACuGCCACCA---GCUA- -5'
18191 5' -55.4 NC_004680.1 + 34507 0.68 0.631651
Target:  5'- gCCGggGGagcugGGUGgGAUGGUGG-CGGUg -3'
miRNA:   3'- -GGCuaCCa----CCACaCUGCCACCaGCUA- -5'
18191 5' -55.4 NC_004680.1 + 24529 0.69 0.588322
Target:  5'- aCCGAUcaggaGGcGGUgGUGGCGGUGG-CGGc -3'
miRNA:   3'- -GGCUA-----CCaCCA-CACUGCCACCaGCUa -5'
18191 5' -55.4 NC_004680.1 + 47237 0.69 0.560429
Target:  5'- aCGAUGGggGGUGagucguacgguccgGGCGGUGGcUCGGg -3'
miRNA:   3'- gGCUACCa-CCACa-------------CUGCCACC-AGCUa -5'
18191 5' -55.4 NC_004680.1 + 46247 0.7 0.514149
Target:  5'- gCCGGguucggcauUGG-GGUGUGugGGUGGagCGGg -3'
miRNA:   3'- -GGCU---------ACCaCCACACugCCACCa-GCUa -5'
18191 5' -55.4 NC_004680.1 + 46119 0.7 0.514149
Target:  5'- gUCGGUGGUGGUgaauucggcgGUGACGG-GG-CGGc -3'
miRNA:   3'- -GGCUACCACCA----------CACUGCCaCCaGCUa -5'
18191 5' -55.4 NC_004680.1 + 32095 0.7 0.493625
Target:  5'- aCCGAUGGUGGaGUGAUccgGGUCGc- -3'
miRNA:   3'- -GGCUACCACCaCACUGccaCCAGCua -5'
18191 5' -55.4 NC_004680.1 + 30467 0.7 0.483503
Target:  5'- aCCGGUgcGGUGGUGaaACGGUGGU-GAUc -3'
miRNA:   3'- -GGCUA--CCACCACacUGCCACCAgCUA- -5'
18191 5' -55.4 NC_004680.1 + 2875 0.72 0.425044
Target:  5'- gCCGGUGGUGGUGUaccagaacccuGAUGGcaUGGgCGAg -3'
miRNA:   3'- -GGCUACCACCACA-----------CUGCC--ACCaGCUa -5'
18191 5' -55.4 NC_004680.1 + 25618 0.72 0.425044
Target:  5'- gUGggGGUGGgccgcGUGGCGG-GGUCGGUu -3'
miRNA:   3'- gGCuaCCACCa----CACUGCCaCCAGCUA- -5'
18191 5' -55.4 NC_004680.1 + 58575 0.72 0.379685
Target:  5'- aUGAcUGGUGGUGUGucUGcGUGGUCGAc -3'
miRNA:   3'- gGCU-ACCACCACACu-GC-CACCAGCUa -5'
18191 5' -55.4 NC_004680.1 + 24736 0.74 0.321855
Target:  5'- aCGGUGGUGGUgGUGGUGGUGGUgGc- -3'
miRNA:   3'- gGCUACCACCA-CACUGCCACCAgCua -5'
18191 5' -55.4 NC_004680.1 + 27360 1.07 0.001751
Target:  5'- uCCGAUGGUGGUGUGACGGUGGUCGAUu -3'
miRNA:   3'- -GGCUACCACCACACUGCCACCAGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.