miRNA display CGI


Results 21 - 40 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18193 5' -63.2 NC_004680.1 + 12680 0.67 0.326276
Target:  5'- uGcCGCCGgccuGCACCGCcauuccgagcgcaCCGcCGCCGUCc -3'
miRNA:   3'- gCuGCGGC----UGUGGCG-------------GGC-GCGGCAGc -5'
18193 5' -63.2 NC_004680.1 + 11601 0.68 0.30537
Target:  5'- uGGCGCCGAU-CUGCCCcaaauccuugGCauGCUGUCGg -3'
miRNA:   3'- gCUGCGGCUGuGGCGGG----------CG--CGGCAGC- -5'
18193 5' -63.2 NC_004680.1 + 10092 0.68 0.291561
Target:  5'- gCGACGUCGAUGCCgGCCCGa-CCGgUCc -3'
miRNA:   3'- -GCUGCGGCUGUGG-CGGGCgcGGC-AGc -5'
18193 5' -63.2 NC_004680.1 + 59325 0.68 0.278244
Target:  5'- -aACGCCGACA-CGCCCGCaaGCC-UCu -3'
miRNA:   3'- gcUGCGGCUGUgGCGGGCG--CGGcAGc -5'
18193 5' -63.2 NC_004680.1 + 16788 0.68 0.278244
Target:  5'- aCGAC-CCGACACCGgCggaaGCGUCGUUc -3'
miRNA:   3'- -GCUGcGGCUGUGGCgGg---CGCGGCAGc -5'
18193 5' -63.2 NC_004680.1 + 743 0.68 0.278244
Target:  5'- -cGCGUgGGCACCGUuuGgcugGCCGUCGg -3'
miRNA:   3'- gcUGCGgCUGUGGCGggCg---CGGCAGC- -5'
18193 5' -63.2 NC_004680.1 + 19830 0.68 0.278244
Target:  5'- aCGACGCCaACG-CGCCCuuacCGCCGUUa -3'
miRNA:   3'- -GCUGCGGcUGUgGCGGGc---GCGGCAGc -5'
18193 5' -63.2 NC_004680.1 + 11170 0.68 0.27177
Target:  5'- gGGCGCCGGgGCCGCCaccaaG-GCCGccCGg -3'
miRNA:   3'- gCUGCGGCUgUGGCGGg----CgCGGCa-GC- -5'
18193 5' -63.2 NC_004680.1 + 852 0.69 0.259185
Target:  5'- uCGACGCCaGC-CCGCUCGaacCGCCGaCGg -3'
miRNA:   3'- -GCUGCGGcUGuGGCGGGC---GCGGCaGC- -5'
18193 5' -63.2 NC_004680.1 + 34556 0.69 0.253073
Target:  5'- --cCGUCuGCGCCGCCCauguuguggGUGCCGUCGc -3'
miRNA:   3'- gcuGCGGcUGUGGCGGG---------CGCGGCAGC- -5'
18193 5' -63.2 NC_004680.1 + 48183 0.69 0.253073
Target:  5'- cCGGCGCUcauGACAuCCGCCCacGCGCCa--- -3'
miRNA:   3'- -GCUGCGG---CUGU-GGCGGG--CGCGGcagc -5'
18193 5' -63.2 NC_004680.1 + 4207 0.69 0.250662
Target:  5'- gCGuuCGCgGACAUCGCagaccgcggcggaCGCGCCGUUGa -3'
miRNA:   3'- -GCu-GCGgCUGUGGCGg------------GCGCGGCAGC- -5'
18193 5' -63.2 NC_004680.1 + 20291 0.69 0.24708
Target:  5'- gGugGgCGGCACUGUUCGC-CCGUUGa -3'
miRNA:   3'- gCugCgGCUGUGGCGGGCGcGGCAGC- -5'
18193 5' -63.2 NC_004680.1 + 9849 0.69 0.241205
Target:  5'- uGGCGCgGugGCUGgCCGCG-CGUUGg -3'
miRNA:   3'- gCUGCGgCugUGGCgGGCGCgGCAGC- -5'
18193 5' -63.2 NC_004680.1 + 19166 0.69 0.241205
Target:  5'- aCGuCGCCGGaua-GCCCGcCGUCGUCGa -3'
miRNA:   3'- -GCuGCGGCUguggCGGGC-GCGGCAGC- -5'
18193 5' -63.2 NC_004680.1 + 28189 0.69 0.235447
Target:  5'- cCGGuCGUgGACACCcgGCCCGUGCUGaUCa -3'
miRNA:   3'- -GCU-GCGgCUGUGG--CGGGCGCGGC-AGc -5'
18193 5' -63.2 NC_004680.1 + 46078 0.7 0.218863
Target:  5'- --cCGCCGACACCacGCCCuCGCCGa-- -3'
miRNA:   3'- gcuGCGGCUGUGG--CGGGcGCGGCagc -5'
18193 5' -63.2 NC_004680.1 + 27387 0.7 0.208369
Target:  5'- -uGCGUCGACACCGaCCGUGCUGcCu -3'
miRNA:   3'- gcUGCGGCUGUGGCgGGCGCGGCaGc -5'
18193 5' -63.2 NC_004680.1 + 38764 0.7 0.203287
Target:  5'- cCGGCGCgGGCAugguucccCCGCCCcccGCGCCGg-- -3'
miRNA:   3'- -GCUGCGgCUGU--------GGCGGG---CGCGGCagc -5'
18193 5' -63.2 NC_004680.1 + 21462 0.71 0.184022
Target:  5'- gGAC-CCGAgaaguaCACCGCCgGCGCCGcCa -3'
miRNA:   3'- gCUGcGGCU------GUGGCGGgCGCGGCaGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.